Factsheet for TraesCS4B01G395700.3

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G014200.1
TraesCS2A01G455900.1
TraesCS2B01G003600.1
TraesCS2B01G477900.1
TraesCS2D01G014900.1
TraesCS2D01G456200.1
TraesCS4A01G166200.2
TraesCS4A01G182300.1	plasma membrane
TraesCS4A01G222200.1
TraesCS4B01G094200.1
TraesCS4B01G136100.2	plasma membrane
TraesCS4B01G165000.1
TraesCS4D01G091000.1
TraesCS4D01G130900.1	plasma membrane
TraesCS4D01G166700.1
TraesCS5A01G112300.2	golgi
TraesCS5A01G153500.1	plasma membrane
TraesCS5B01G113000.1	golgi
TraesCS5B01G152300.1	plasma membrane
TraesCS5D01G119700.1	golgi
TraesCS5D01G158800.1	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22770.1	TraesCS5A01G112300.2	AT1G47830.1	23975899
AT5G22770.1	TraesCS5B01G113000.1	AT1G47830.1	23975899
AT5G22770.1	TraesCS5D01G119700.1	AT1G47830.1	23975899
AT5G22770.1	TraesCS5A01G112300.2	AT1G47830.1	23975899
AT5G22770.1	TraesCS5B01G113000.1	AT1G47830.1	23975899
AT5G22770.1	TraesCS5D01G119700.1	AT1G47830.1	23975899
AT5G22770.1	TraesCS4A01G222200.1	AT3G01780.1	24529374
AT5G22770.1	TraesCS4B01G094200.1	AT3G01780.1	24529374
AT5G22770.1	TraesCS4D01G091000.1	AT3G01780.1	24529374
AT5G22770.1	TraesCS4A01G182300.1	AT3G11130.1	23975898
AT5G22770.1	TraesCS4B01G136100.2	AT3G11130.1	23975898
AT5G22770.1	TraesCS4D01G130900.1	AT3G11130.1	23975898
AT5G22770.1	TraesCS5A01G153500.1	AT3G11130.1	23975898
AT5G22770.1	TraesCS5B01G152300.1	AT3G11130.1	23975898
AT5G22770.1	TraesCS5D01G158800.1	AT3G11130.1	23975898
AT5G22770.1	TraesCS4A01G166200.2	AT4G23460.1	23975899
AT5G22770.1	TraesCS4B01G165000.1	AT4G23460.1	23975899
AT5G22770.1	TraesCS4D01G166700.1	AT4G23460.1	23975899
AT5G22770.1	TraesCS2A01G014200.1	AT5G57460.1	24529374
AT5G22770.1	TraesCS2B01G003600.1	AT5G57460.1	24529374
AT5G22770.1	TraesCS2D01G014900.1	AT5G57460.1	24529374
AT5G22770.1	TraesCS2A01G455900.1	AT5G65960.1	23975899
AT5G22770.1	TraesCS2B01G477900.1	AT5G65960.1	23975899
AT5G22770.1	TraesCS2D01G456200.1	AT5G65960.1	23975899

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G557300.1	Wheat	cytosol	99.42	99.33
Os03t0112101-00	Rice	plasma membrane	37.08	98.97
HORVU4Hr1G089310.1	Barley	cytosol	94.43	92.56
GSMUA_Achr5P15260_001	Banana	cytosol	11.43	90.84
Solyc11g066760.1.1	Tomato	cytosol	39.77	88.65
KXG40365	Sorghum	cytosol	88.76	88.51
CDY20343	Canola	cytosol	26.32	87.82
Zm00001d027333_P018	Maize	cytosol	87.03	84.83
Zm00001d048511_P008	Maize	cytosol	86.55	84.6
Os03t0112400-01	Rice	cytosol	11.91	81.05
GSMUA_Achr1P01770_001	Banana	cytosol	78.77	80.0
VIT_06s0061g01170.t01	Wine grape	cytosol	75.79	77.73
Solyc06g074650.2.1	Tomato	plastid	73.97	75.71
Bra037603.1-P	Field mustard	cytosol	72.24	74.16
AT5G22780.1	Thale cress	cytosol	72.05	74.04
AT5G22770.1	Thale cress	cytosol	71.85	73.91
CDY26951	Canola	cytosol	71.47	73.81
CDX92339	Canola	cytosol	71.37	73.78
Bra002427.1-P	Field mustard	cytosol	71.37	73.78
CDY29719	Canola	cytosol	65.71	69.72
GSMUA_Achr5P15250_001	Banana	cytosol	65.03	68.18
CDY20344	Canola	cytosol	40.15	64.81
KRH25154	Soybean	cytosol	23.25	59.46
Solyc11g066770.1.1	Tomato	cytosol	24.78	59.45
TraesCS7B01G029800.2	Wheat	cytosol	20.46	24.48
TraesCS6B01G410900.2	Wheat	cytosol	20.17	23.44
TraesCS3B01G457300.1	Wheat	cytosol, nucleus, plastid	16.81	18.36
TraesCS1B01G225600.1	Wheat	plastid	13.26	14.95

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1230	MapMan:22.1.3.1	Gene3D:3.30.310.10	InterPro:AP2_complex_asu	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a-adaptin_app_sub_C	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:Coatomer/calthrin_app_sub_C
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030131	GO:GO:0035615	GO:GO:0072583	InterPro:IPR011989
InterPro:IPR012295	PFAM:PF01602	PFAM:PF02296	PFAM:PF02883	PIRSF:PIRSF037091	PANTHER:PTHR22780
PANTHER:PTHR22780:SF4	SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348	SUPFAM:SSF55711	InterPro:TBP_dom_sf
EnsemblPlantsGene:TraesCS4B01G395700	EnsemblPlants:TraesCS4B01G395700.3	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4B:+:670400398..670410140

Molecular Weight (calculated)

116012.0 Da

IEP (calculated)

6.180

GRAVY (calculated)

-0.112

Length

1041 amino acids

Sequence
(BLAST)

0001: MALSGMRGLS VFISDIRNCH NKEQERLRVD KELGNIRTRF KNEKGLSHYE KKKYVWKMLY IHMLGYDVDF GHMETVSLIS APKYPEKQVG YIVTSCLLNE
0101: NNDFLRMVIN TVRNDIIGRN ETYQCLALTM VGNIGGKEFS ESLAPDVQKL LISSSCRPVV RKKAALCLLR LYRKNPDVVN IDGWSDRMAQ LLDERDLGVL
0201: TSVMSLFVSL VSNNAEAYWN CLPKCVRILE RMARNQDIPQ EYTYYGIPSP WLQVKAMRAL QYFPTIEDPS ARRALFEVLQ RILMGTDVVK NVNKNNASHA
0301: VLFEALALVM HLDAEKEMMS QCVALLGKFI AVREPNIRYL GLENMSRMLL VTDVQDIIKR HQAQIITSLK DPDISIRRRA LDLLYGMCDV TNAKEIVEEL
0401: LQYLNTAEFA MREELALKAA ILAEKFAPNL SWYVDVILQL IDKAGDFVSD DIWYRVVQFV TNNEDLQAYA AAKAREYLDK PALHETMVKV SAYLLGEYGH
0501: LLAQRPSCSP KELFTIINDR LPTVSSSTVA IIISAYAKIL MHTQPPDAGL QQQILAIFKK HESYIDVEIQ QRAVEYFELS RKGPALADVL AEMPKFPERE
0601: SALLKKAEDA EVDTAEQSAI KLRSQQQSSS AIVVAAQPPV NGPAPAANHL TLVKMPSQNI AEESNVIHEE TAVEAPKENG APVEVQRNVE IITEPAPVSK
0701: VEPPASRPAS QADLLADLLG PLAIEGPPAA VEQTPAQGLE ANQSPVGDLA LATLEDQSNS VQPIVNVEEK FNILCTKDSG VLYEDPNIQI GLKAEWRAHH
0801: GRLILFLGNK NTSPLLSLRA LILPPSHFKV ELSSVPDTIP PRAQVQIPVE VTNLRASRDV AVLDFSYKHG AALVNAKLRL PIVLHKFLQP ITLSPEDFFA
0901: HWKTWNVQSL KVQEVVRGVK PLPIPEMASL LLSLHLAVTP GLDTNPNNMV ACATFFSETT NAALCLVRVE TDPQDRSQLR LTVASGDQNL TFELKEYIKE
1001: HLIDIPRARV APPPAPQQPQ MPPAAPATTY NDPGAMLAGL L

Best Arabidopsis Sequence Match ( AT5G22780.1 )
(BLAST)

0001: MTGMRGLSVF ISDVRNCQNK EAERLRVDKE LGNIRTCFKN EKVLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
0101: DFLKLAINTV RNDIIGRNET FQCLALTLVG NIGGRDFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDAVNVD GWADRMAQLL DERDLGVLTS
0201: STSLLVALVS NNHEAYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKAMRALQY FPTIEDPSTR KALFEVLQRI LMGTDVVKNV NKNNASHAVL
0301: FEALSLVMHL DAEKEMMSQC VALLGKFISV REPNIRYLGL ENMTRMLMVT DVQDIIKKHQ SQIITSLKDP DISIRRRALD LLYGMCDVSN AKDIVEELLQ
0401: YLSTAEFSMR EELSLKAAIL AEKFAPDLSW YVDVILQLID KAGDFVSDDI WFRVVQFVTN NEDLQPYAAS KAREYMDKIA IHETMVKVSA YILGEYGHLL
0501: ARQPGCSASE LFSILHEKLP TVSTPTIPIL LSTYAKLLMH AQPPDPELQK KVWAVFKKYE SCIDVEIQQR AVEYFELSKK GPAFMDVLAE MPKFPERQSS
0601: LIKKAENVED TADQSAIKLR AQQQPSNAIV LADPQPVNGA PPPLKVPILS GSTDPESVAR SLSHPNGTLS NIDPQTPSPD LLSDLLGPLA IEAPPGAVSY
0701: EQHGPVGAEG VPDEIDGSAI VPVEEQTNTV ELIGNIAERF HALCLKDSGV LYEDPHIQIG IKAEWRGHHG RLVLFMGNKN TSPLTSVQAL ILPPAHLRLD
0801: LSPVPDTIPP RAQVQSPLEV MNIRPSRDVA VLDFSYKFGT NVVSAKLRIP ATLNKFLQPL QLTSEEFFPQ WRAISGPPLK LQEVVRGVRP LALPEMANLF
0901: NSFHVTICPG LDPNPNNLVA STTFYSETTG AMLCLARIET DPADRTQLRL TVGSGDPTLT FELKEFIKEQ LITIPMGSRA LVPAAGPAPS PAVQPPSPAA
1001: LADDPGAMLA GLL

Arabidopsis Description

ALPHAC-ADAP-2 complex subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPK4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.