Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- extracellular 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2D01G014900.1 | Wheat | plastid | 98.73 | 97.8 |
TraesCS2A01G014200.1 | Wheat | plastid | 97.62 | 97.01 |
HORVU2Hr1G002480.5 | Barley | cytosol | 65.45 | 96.72 |
HORVU2Hr1G002410.2 | Barley | plastid | 96.51 | 88.39 |
Os08t0243900-01 | Rice | plasma membrane, plastid | 89.54 | 88.14 |
EES14778 | Sorghum | plastid | 88.11 | 87.28 |
Zm00001d024416_P001 | Maize | plasma membrane | 87.96 | 87.13 |
GSMUA_Achr3P27960_001 | Banana | plastid | 67.83 | 65.34 |
VIT_11s0052g00920.t01 | Wine grape | mitochondrion | 56.74 | 57.65 |
KRG90331 | Soybean | endoplasmic reticulum | 56.58 | 56.67 |
KRH02873 | Soybean | endoplasmic reticulum, nucleus | 55.31 | 55.4 |
PGSC0003DMT400029685 | Potato | cytosol, plastid | 54.83 | 54.49 |
Solyc10g078790.1.1 | Tomato | nucleus | 54.52 | 54.17 |
CDX88623 | Canola | plastid | 54.99 | 54.13 |
CDY11868 | Canola | plastid | 55.15 | 54.12 |
AT5G57460.1 | Thale cress | cytosol | 55.31 | 54.02 |
Bra006819.1-P | Field mustard | plastid | 54.99 | 53.97 |
Bra002727.1-P | Field mustard | plastid | 54.52 | 53.75 |
CDY38299 | Canola | plastid | 54.36 | 53.34 |
CDY25907 | Canola | plastid | 54.04 | 52.87 |
Protein Annotations
EnsemblPlants:TraesCS2B01G003600.1 | EnsemblPlantsGene:TraesCS2B01G003600 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0005886 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016020 | InterPro:AP2_Mu_C_sf | InterPro:IPR028565 |
InterPro:MHD | InterPro:Muniscin_C | PANTHER:PTHR37769 | PFAM:PF10291 | PFscan:PS51072 | SEG:seg |
SUPFAM:SSF49447 | MapMan:22.1.4.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:1831881..1833776
Molecular Weight (calculated)
67096.4 Da
IEP (calculated)
6.135
GRAVY (calculated)
0.000
Length
631 amino acids
Sequence
(BLAST)
(BLAST)
001: MACLAISLQP VNGPDILLQT RSWFPVSRAL AAVSAFRLAR LSLARGKQQH ASLDAIGDDP LATGSGQLVV GVESQYRVVY RLVNSIYVLG VTTASDHAAP
101: AVHAFAVADA VNQAVSVLVA ACRGVDATPD KVHRKYPEVY LALDLVLHGV GSVRLSQILA TIHGDNLARM VNSSPDAEAR ARGADSWPVV EHLAQDRHAA
201: RDGFAAASFE LPLETLSAGD EFSASSLAPA VAAATGDEPP PEEAPPIEKD PFAASDMVVS KPEEALVGAF KKNKETALVV ADPAAALAGL EVTTLPPAEA
301: TKPTFIGVEG FEGDYGGIEF GNEEASLAEA FEGFNAPFGG GLDASEFVTT TKKDHKDKTL TGLEILAMSG GQAPNAVSSG SPLDSLVTPS KDMTVPELCI
401: VEEINAEFKE SVLARVGLKG TIILRTLPPK KAAGRETEFS FRLEGTSGMK RAALQSTVLS SLENGLFHVK TPSKEEPIPI MKYSFLPKHS PLPLRLRLVK
501: RHSGTLLSLM IHYASNPMLP QPLSNVTFIV KLPVDPTLLN VSPKAVLNRA ERELRWHISD IPLKGPAGRL RARMPVDQDS KDGELEVVGM VKFAYQGPFT
601: LSGIKLCPAI NSTAQFNEVG HTFSSGSYRC I
101: AVHAFAVADA VNQAVSVLVA ACRGVDATPD KVHRKYPEVY LALDLVLHGV GSVRLSQILA TIHGDNLARM VNSSPDAEAR ARGADSWPVV EHLAQDRHAA
201: RDGFAAASFE LPLETLSAGD EFSASSLAPA VAAATGDEPP PEEAPPIEKD PFAASDMVVS KPEEALVGAF KKNKETALVV ADPAAALAGL EVTTLPPAEA
301: TKPTFIGVEG FEGDYGGIEF GNEEASLAEA FEGFNAPFGG GLDASEFVTT TKKDHKDKTL TGLEILAMSG GQAPNAVSSG SPLDSLVTPS KDMTVPELCI
401: VEEINAEFKE SVLARVGLKG TIILRTLPPK KAAGRETEFS FRLEGTSGMK RAALQSTVLS SLENGLFHVK TPSKEEPIPI MKYSFLPKHS PLPLRLRLVK
501: RHSGTLLSLM IHYASNPMLP QPLSNVTFIV KLPVDPTLLN VSPKAVLNRA ERELRWHISD IPLKGPAGRL RARMPVDQDS KDGELEVVGM VKFAYQGPFT
601: LSGIKLCPAI NSTAQFNEVG HTFSSGSYRC I
001: MSCLALALQP ANGSDILLQT REWFPPARAL IALSYFRQMR QALASSKQQH QQQSNQKQNQ ASSSSSSSSS VADPDDATAA EFVGDDPLAA SNGQVIVGVE
101: SKYRVVYRLV NSIYILGVTV ADHDNSINVF ECIHIVNQAV SVIVTACRGV EVTPEKLGRK YAEVYMALDI VLRGVSNIRL AAMLGAMHGD GIAKMVHSAL
201: DTENKIRGAD SWMAVESHAA EHQASVNAFS NARFELPPET VAAGDEFAAS LAPVVPESEQ LKEEPEPENK DPFAASETIN KEKELVGGFK KTKDPSSTDL
301: TLALAGLEVT TLPPAEATQS THINVEGFEG QYGGIEFSNE QATIGETFES FSDAWGGGLD PSEFMGPKKI QKKEGLGGLE LLHTSDPKAV EGKDGVNIDN
401: LVKKPEMKGP EMYISEEIRT EFRESLLARV GVMGVIYLKT MPPKGSGEEK ETEFSFRVEG TTAVKRFAMQ SSRISSLGNG LFHVRTAPSE EPIPILKYSL
501: QPKLTPLPLR VRMVKRISGT LLSLMIQYVS NPDLPQPLKN VDFILKLPVD PTLLKVSPKA ILNRTDRELK WQIPEIPLNG SPGRLRARMP IDSDNSEEEP
601: DIICYVKFSV QGNTSLSGIS LRAAAEGNTD FFEVDHRYET GVYMCN
101: SKYRVVYRLV NSIYILGVTV ADHDNSINVF ECIHIVNQAV SVIVTACRGV EVTPEKLGRK YAEVYMALDI VLRGVSNIRL AAMLGAMHGD GIAKMVHSAL
201: DTENKIRGAD SWMAVESHAA EHQASVNAFS NARFELPPET VAAGDEFAAS LAPVVPESEQ LKEEPEPENK DPFAASETIN KEKELVGGFK KTKDPSSTDL
301: TLALAGLEVT TLPPAEATQS THINVEGFEG QYGGIEFSNE QATIGETFES FSDAWGGGLD PSEFMGPKKI QKKEGLGGLE LLHTSDPKAV EGKDGVNIDN
401: LVKKPEMKGP EMYISEEIRT EFRESLLARV GVMGVIYLKT MPPKGSGEEK ETEFSFRVEG TTAVKRFAMQ SSRISSLGNG LFHVRTAPSE EPIPILKYSL
501: QPKLTPLPLR VRMVKRISGT LLSLMIQYVS NPDLPQPLKN VDFILKLPVD PTLLKVSPKA ILNRTDRELK WQIPEIPLNG SPGRLRARMP IDSDNSEEEP
601: DIICYVKFSV QGNTSLSGIS LRAAAEGNTD FFEVDHRYET GVYMCN
Arabidopsis Description
At5g57460 [Source:UniProtKB/TrEMBL;Acc:Q9FKM4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.