Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G508500.3 | Wheat | nucleus | 91.7 | 92.3 |
| TraesCS4A01G364900.3 | Wheat | nucleus | 92.48 | 92.12 |
| HORVU5Hr1G115980.56 | Barley | endoplasmic reticulum | 50.97 | 77.51 |
| TraesCS5B01G508700.1 | Wheat | cytosol | 60.96 | 71.65 |
| TraesCS4B01G020400.1 | Wheat | nucleus | 41.89 | 67.01 |
| Os03t0831100-01 | Rice | nucleus | 53.18 | 62.22 |
| EER90567 | Sorghum | cytosol | 49.03 | 57.98 |
| Zm00001d034750_P004 | Maize | nucleus | 48.64 | 54.11 |
| KRH50793 | Soybean | endoplasmic reticulum | 36.58 | 44.48 |
| KRH02300 | Soybean | nucleus | 36.71 | 44.43 |
| VIT_05s0077g01770.t01 | Wine grape | plastid | 37.09 | 43.2 |
| Solyc01g065580.2.1 | Tomato | nucleus | 34.5 | 42.9 |
| CDY04809 | Canola | nucleus | 11.02 | 42.71 |
| PGSC0003DMT400003012 | Potato | nucleus | 34.24 | 42.58 |
| CDX94564 | Canola | nucleus | 10.77 | 41.71 |
| GSMUA_Achr1P26570_001 | Banana | nucleus | 36.71 | 41.68 |
| Bra036641.1-P | Field mustard | nucleus | 6.23 | 40.68 |
| CDX92099 | Canola | nucleus | 33.33 | 39.97 |
| AT3G16810.1 | Thale cress | nucleus | 33.2 | 39.94 |
| Bra022180.1-P | Field mustard | nucleus | 33.2 | 39.81 |
| CDX95901 | Canola | nucleus | 33.46 | 39.51 |
| GSMUA_Achr1P26590_001 | Banana | nucleus | 28.79 | 38.88 |
| CDY34785 | Canola | extracellular | 6.61 | 37.5 |
| GSMUA_Achr1P26600_001 | Banana | extracellular | 9.73 | 35.38 |
| Zm00001d017902_P001 | Maize | nucleus | 5.19 | 33.33 |
| KRH65810 | Soybean | nucleus | 4.41 | 27.64 |
| KRG88602 | Soybean | nucleus | 4.28 | 26.83 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G508600.1 | EnsemblPlantsGene:TraesCS5B01G508600 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0031047 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:IPR001313 | InterPro:IPR011989 | InterPro:Pumilio_RNA-bd_rpt | InterPro:Znf-XS_domain | PANTHER:PTHR13389 |
| PFAM:PF03470 | SEG:seg | SMART:SM00025 | SUPFAM:SSF48371 | MapMan:17.1.1.9.3 | : |
Description
No Description!
Coordinates
chr5B:-:673686701..673691987
Molecular Weight (calculated)
86447.9 Da
IEP (calculated)
9.336
GRAVY (calculated)
-0.349
Length
771 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGGPPGS KKRKRAAARR SKASKRAKGK KPYEAPAARG GGGGSKEEPQ PVTAMDERAE AEEMSESTEP DCSLEKELKL LCVKLRYYNM RTNRRCRLVT
101: EALRKMDGKY LEIARSPTAC VLQLCVKWCS HSERDPIFVA LQPHLLDLSL DEHTVFLVHN IIKMATRKQF ARFIYSLRGH VASLLCHTIG AAVLDHAFNL
201: ATRPQKRSLL LELYSTELQL SNDLKEEKPC RFSLLNIISK LGLQKSSVLQ HMTTVIQQVL EKGIVEYSIV HTVILEYLTI ADKTSALDVI RQLIPHLTER
301: TYALDELSGV ARLLGKPEVE KKRSSKPLLI QIMQTKEGLK LGLACLKHGL AEDRKRIIKS LKWRIMKLAL SDYGCLFVIC LLSIVDNTEL VTEVVIDVLK
401: KQLKELIFDK NGRHPLLQLF HPLCSRYLTL GELFYLNYNV PSLVSKVNFG SKLDDVADKE HGGSEDTLIA SDSKEDPIKR RQELLVKSEL YEVLIETCIE
501: NVGQLLRTNF GKDVLYEVAV GGKNNFLEGV TDRIHVLHNA IACDAARPRT DDGDEHAFDN YHSSRTIRRM ILDCPAFAAT LWKTALEGKC KLYADGFSSM
601: VLAAYLESPN SGVKDLAKSE LQPLIDGGIL KPQDHKAEEK SAMECSSDES SSELSDTDTG YHAKKAYKDL KSGKLVARFG TDRFRCPFCP EKKKKLDYRY
701: RELIQHVIVV GASRRPWKVR ANHRALGKHL ETDHADAPGS SKMPLRQAEA LYLSKIKSSQ AGPRSTCKPS R
101: EALRKMDGKY LEIARSPTAC VLQLCVKWCS HSERDPIFVA LQPHLLDLSL DEHTVFLVHN IIKMATRKQF ARFIYSLRGH VASLLCHTIG AAVLDHAFNL
201: ATRPQKRSLL LELYSTELQL SNDLKEEKPC RFSLLNIISK LGLQKSSVLQ HMTTVIQQVL EKGIVEYSIV HTVILEYLTI ADKTSALDVI RQLIPHLTER
301: TYALDELSGV ARLLGKPEVE KKRSSKPLLI QIMQTKEGLK LGLACLKHGL AEDRKRIIKS LKWRIMKLAL SDYGCLFVIC LLSIVDNTEL VTEVVIDVLK
401: KQLKELIFDK NGRHPLLQLF HPLCSRYLTL GELFYLNYNV PSLVSKVNFG SKLDDVADKE HGGSEDTLIA SDSKEDPIKR RQELLVKSEL YEVLIETCIE
501: NVGQLLRTNF GKDVLYEVAV GGKNNFLEGV TDRIHVLHNA IACDAARPRT DDGDEHAFDN YHSSRTIRRM ILDCPAFAAT LWKTALEGKC KLYADGFSSM
601: VLAAYLESPN SGVKDLAKSE LQPLIDGGIL KPQDHKAEEK SAMECSSDES SSELSDTDTG YHAKKAYKDL KSGKLVARFG TDRFRCPFCP EKKKKLDYRY
701: RELIQHVIVV GASRRPWKVR ANHRALGKHL ETDHADAPGS SKMPLRQAEA LYLSKIKSSQ AGPRSTCKPS R
001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
Arabidopsis Description
APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.