Factsheet for PGSC0003DMT400003012

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g065580.2.1	Tomato	nucleus	94.35	94.35
VIT_05s0077g01770.t01	Wine grape	plastid	66.29	62.08
KRH50793	Soybean	endoplasmic reticulum	62.26	60.88
KRH02300	Soybean	nucleus	60.97	59.34
Bra022180.1-P	Field mustard	nucleus	58.39	56.3
CDX92099	Canola	nucleus	58.39	56.3
CDX95901	Canola	nucleus	58.39	55.44
AT3G16810.1	Thale cress	nucleus	56.77	54.91
CDY04809	Canola	nucleus	16.77	52.26
CDX94564	Canola	nucleus	16.61	51.76
KRH65810	Soybean	nucleus	9.52	47.97
KRG88602	Soybean	nucleus	9.52	47.97
GSMUA_Achr1P26570_001	Banana	nucleus	52.42	47.86
Os03t0831100-01	Rice	nucleus	50.48	47.5
TraesCS5D01G508700.1	Wheat	nucleus	49.84	47.25
TraesCS4A01G364800.1	Wheat	nucleus	49.68	47.09
TraesCS5B01G508700.1	Wheat	cytosol	49.52	46.8
TraesCS4B01G020400.1	Wheat	nucleus	36.29	46.68
Bra036641.1-P	Field mustard	nucleus	8.87	46.61
GSMUA_Achr1P26590_001	Banana	nucleus	42.58	46.23
EER90567	Sorghum	cytosol	48.55	46.17
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	49.19	44.66
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	48.23	44.56
CDY34785	Canola	extracellular	9.52	43.38
Zm00001d034750_P004	Maize	nucleus	48.06	43.0
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	34.84	42.6
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	43.39	36.06
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	9.52	35.98
TraesCS5D01G508500.3	Wheat	nucleus	43.39	35.12
GSMUA_Achr1P26600_001	Banana	extracellular	11.94	34.91
TraesCS4A01G364900.3	Wheat	nucleus	43.39	34.75
TraesCS6D01G249500.1	Wheat	plastid	40.97	34.32
TraesCS5B01G508600.1	Wheat	nucleus	42.58	34.24
Zm00001d017902_P001	Maize	nucleus	6.61	34.17

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102600058	MapMan:17.1.1.9.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:CPL_dom
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0007275	GO:GO:0008150
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	InterPro:IPR001313	InterPro:IPR011989	InterPro:IPR033133
UniProt:M0ZL16	PFAM:PF00806	PFAM:PF08144	EnsemblPlantsGene:PGSC0003DMG400001190	PGSC:PGSC0003DMG400001190	EnsemblPlants:PGSC0003DMT400003012
PFscan:PS50302	PFscan:PS50303	PANTHER:PTHR13389	InterPro:PUM-HD	InterPro:Pumilio_RNA-bd_rpt	SMART:SM00025
SUPFAM:SSF48371	UniParc:UPI000295B49F	RefSeq:XP_006354295.1	SEG:seg	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400001190]

Coordinates

chr1:+:11737488..11743868

Molecular Weight (calculated)

68574.7 Da

IEP (calculated)

10.099

GRAVY (calculated)

-0.352

Length

620 amino acids

Sequence
(BLAST)

001: MAAKPDDSKK RKHAPAAGGK SAPKKLKSST DKVLKKPHKS TKQLGDKKQQ PKPHVPVESK RERRIQAKEL AEARKKKRKK HYTLEQELAS LWEKMRTRNI
101: AKEERSRLVS DALKKMKGKI PEIASSHVSS RVLQTCVKHC TQDERNAVFV EIRPHFITLA TNTYAVHLVT KMLDNASKEQ QAQFISALHG HVSTLLRHMV
201: GSLVVEHAYQ LGNAAQKQTL LMELYSPELQ LFKDLISAKE ARLVDVISNL QLQKGSVIRH MTSVLQPIME KGILDHSIIH RALVEYLTIA DKTSAAEIIQ
301: QLSSPDLVRM IHTKDGSKIG IFCIKHGSAK ERKKIIKGMK DKVGKVARDK CGALVLVSIL SIVDDTKLLS KVIIRELEGI LKELLSDQNG RRPLLQLLHP
401: NSSRHFSPDE LAALGSSVPS LVTKSPSEVN ETETSGLGEA GKEDADVTES SLVNEGGKKD PLTRRQELLV HSGLAEKLID ACCEMAEELL RSNFGKDVIY
501: EVAMGGADSI LSPTLDGKLE TLHGVIASLA AHPKMEGSDE QHLFEHFHSS RTIRKLILDS PSFACTLYEK ALKGKCSIWA QGHSAKVISA LLETSSAMVH
601: KLVKKEVQPL VDDGILKLAK

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.