Factsheet for Zm00001d034750_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017902_P001	Maize	nucleus	15.58	90.0
EER90567	Sorghum	cytosol	81.39	86.5
Os03t0831100-01	Rice	nucleus	67.68	71.17
TraesCS5D01G508700.1	Wheat	nucleus	63.92	67.74
TraesCS4A01G364800.1	Wheat	nucleus	63.64	67.43
TraesCS5B01G508700.1	Wheat	cytosol	63.2	66.77
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	63.35	65.42
TraesCS4B01G020400.1	Wheat	nucleus	45.45	65.35
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	63.64	64.57
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	43.15	58.97
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	12.55	53.05
KRH02300	Soybean	nucleus	47.33	51.49
GSMUA_Achr1P26570_001	Banana	nucleus	49.93	50.96
KRH50793	Soybean	endoplasmic reticulum	46.61	50.95
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	54.83	50.94
VIT_05s0077g01770.t01	Wine grape	plastid	46.75	48.94
TraesCS5B01G508600.1	Wheat	nucleus	54.11	48.64
TraesCS5D01G508500.3	Wheat	nucleus	53.68	48.56
TraesCS4A01G364900.3	Wheat	nucleus	54.11	48.45
GSMUA_Achr1P26590_001	Banana	nucleus	39.68	48.16
PGSC0003DMT400003012	Potato	nucleus	43.0	48.06
Solyc01g065580.2.1	Tomato	nucleus	42.86	47.9
TraesCS6D01G249500.1	Wheat	plastid	50.65	47.43
CDY04809	Canola	nucleus	13.56	47.24
AT3G16810.1	Thale cress	nucleus	42.86	46.33
CDX94564	Canola	nucleus	13.28	46.23
Bra022180.1-P	Field mustard	nucleus	42.42	45.72
CDX92099	Canola	nucleus	42.28	45.57
CDX95901	Canola	nucleus	42.71	45.33
Bra036641.1-P	Field mustard	nucleus	7.65	44.92
CDY34785	Canola	extracellular	8.08	41.18
GSMUA_Achr1P26600_001	Banana	extracellular	11.98	39.15
KRG88602	Soybean	nucleus	6.78	38.21
KRH65810	Soybean	nucleus	6.49	36.59

Protein Annotations

EntrezGene:100191998	MapMan:17.1.1.9.3	UniProt:A0A1D6LAI6	InterPro:ARM-type_fold	InterPro:CPL_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR001313	InterPro:IPR033133	ProteinID:ONM11137.1
PFAM:PF08144	PFscan:PS50302	PFscan:PS50303	InterPro:PUM-HD	InterPro:Pumilio_RNA-bd_rpt	SMART:SM00025
SUPFAM:SSF48371	UniParc:UPI00084317D3	EnsemblPlantsGene:Zm00001d034750	EnsemblPlants:Zm00001d034750_P004	EnsemblPlants:Zm00001d034750_T004	SEG:seg

Description

Pumilio homolog 24

Coordinates

chr1:-:301294415..301300276

Molecular Weight (calculated)

76926.2 Da

IEP (calculated)

9.746

GRAVY (calculated)

-0.195

Length

693 amino acids

Sequence
(BLAST)

001: MAGGGLQGAK KRKREHAEGK AKPRKQVKGG GDGAKRKSHS AAGGYTAHGG AGEVVARKKT PVTPKEKRLA AKEMSEARKM KRRQHYSLEK VLQCCFSAPY
101: VPVAKFNACL LCLTLNTGQE LTKLWEKMRC HDVSKEERSK AVSQAIHKMD GKYLDIATSH VTARVLQTCV KWCSESERDA IFDVLQPHLL TLSCKKYAVF
201: LVKKLIELAS KKQFASFISS LHGRVANLLH HTIGAAVVDY AFQRGTQRQK RQLLVELYSP ELQLFKDLTV QSSSCLIDTI SKLGLQISSV LLHMTIVIDK
301: ILEKGTVEYL IVHTAILEYF TIADKTSASD AICQLIPLLT QGALIIDGDE PTNAPELPKK AKAKKKRSKE PLIVRIMQTR EGLKLGISCV KYGSAKDRKK
401: IIKSLKGHIM KLALSDFGCL FLICIISIVD DTKLVNKIVI QELVKHLKQL IFDKNGRRPL LQLLHPFCSR YLSPNDLACL NYNVPSLSST EVETSESAIG
501: VITENKLDDV TAQDPNGLEG KQIVFESKKD PLQRRHELLI KSELAEALVQ SCIENVGELL RTNFGKEVLY EMAVGGKDNV LDGLTDRIHM LHDAIASDAA
601: QPKTEDTEHA FENFFSSRVI RRMVIDCPAF AVTLWRKALQ GKCKIWAEGH SSKVVASFLE SPSTEVKDLA KPELQPLVDA GILKVPDPKV VQK

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.