Factsheet for GSMUA_Achr1P26600_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 1
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	29.72	38.41
CDY04809	Canola	nucleus	29.72	31.66
CDX94564	Canola	nucleus	28.77	30.65
Bra036641.1-P	Field mustard	nucleus	12.74	22.88
CDY34785	Canola	extracellular	12.74	19.85
GSMUA_Achr1P26570_001	Banana	nucleus	60.85	19.0
VIT_05s0077g01770.t01	Wine grape	plastid	44.81	14.35
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	32.55	13.61
KRH50793	Soybean	endoplasmic reticulum	39.62	13.25
KRH02300	Soybean	nucleus	39.15	13.03
Os03t0831100-01	Rice	nucleus	38.21	12.29
EER90567	Sorghum	cytosol	37.26	12.12
Zm00001d034750_P004	Maize	nucleus	39.15	11.98
PGSC0003DMT400003012	Potato	nucleus	34.91	11.94
Solyc01g065580.2.1	Tomato	nucleus	34.91	11.94
TraesCS5D01G508700.1	Wheat	nucleus	36.79	11.93
TraesCS5B01G508700.1	Wheat	cytosol	36.79	11.89
TraesCS4A01G364800.1	Wheat	nucleus	36.32	11.77
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	36.79	11.42
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	35.85	11.33
TraesCS4B01G020400.1	Wheat	nucleus	25.47	11.2
AT3G16810.1	Thale cress	nucleus	33.02	10.92
CDX92099	Canola	nucleus	33.02	10.89
Bra022180.1-P	Field mustard	nucleus	32.55	10.73
CDX95901	Canola	nucleus	33.02	10.72
TraesCS5B01G508600.1	Wheat	nucleus	35.38	9.73
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	33.96	9.65
TraesCS5D01G508500.3	Wheat	nucleus	34.43	9.53
TraesCS4A01G364900.3	Wheat	nucleus	34.43	9.43
TraesCS6D01G249500.1	Wheat	plastid	32.55	9.32
GSMUA_Achr1P26590_001	Banana	nucleus	9.43	3.5
Zm00001d017902_P001	Maize	nucleus	0.94	1.67
KRH65810	Soybean	nucleus	0.47	0.81
KRG88602	Soybean	nucleus	0.47	0.81

Protein Annotations

EnsemblPlants:GSMUA_Achr1P26600_001	EnsemblPlants:GSMUA_Achr1T26600_001	EnsemblPlantsGene:GSMUA_Achr1G26600_001	PANTHER:PTHR13389	TMHMM:TMhelix	UniParc:UPI0002952900
UniProt:M0S3B7	MapMan:17.1.1.9.3	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G26600_001]

Coordinates

chr1:+:22190800..22192155

Molecular Weight (calculated)

23866.4 Da

IEP (calculated)

6.497

GRAVY (calculated)

0.317

Length

212 amino acids

Sequence
(BLAST)

001: MSGFLGWFMC HWSFNMPMAF CSGLLFLQLV YCVITTKAII DRPCDSLGFY LILAVGGSDG ILQSFADRMD ALHKAIASLA ALPKTNESQE EHVLENFHSS
101: RLIRKLVLDC PGFAATLWEM ALDGKCDVWA QGHSCKVLLA FLESSVSEVK DLAKPELQPL MDRGVLKAPE NRLVHLLTFH QHVYQLKQHT ILANLEVMNH
201: FCIWILLGFM PD

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.