Factsheet for Os03t0831100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 18203134
nucleus: 19621931
nucleus: 23777608

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G508700.1	Wheat	nucleus	74.05	74.62
TraesCS4A01G364800.1	Wheat	nucleus	73.75	74.31
TraesCS5B01G508700.1	Wheat	cytosol	73.6	73.93
EER90567	Sorghum	cytosol	71.32	72.09
TraesCS4B01G020400.1	Wheat	nucleus	52.35	71.58
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	72.84	71.53
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	73.6	71.01
Zm00001d034750_P004	Maize	nucleus	71.17	67.68
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	48.56	63.12
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	15.17	60.98
Zm00001d017902_P001	Maize	nucleus	10.47	57.5
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	62.97	55.63
KRH50793	Soybean	endoplasmic reticulum	51.9	53.94
KRH02300	Soybean	nucleus	51.9	53.69
TraesCS5D01G508500.3	Wheat	nucleus	62.22	53.52
GSMUA_Achr1P26570_001	Banana	nucleus	55.08	53.46
TraesCS4A01G364900.3	Wheat	nucleus	62.67	53.36
TraesCS5B01G508600.1	Wheat	nucleus	62.22	53.18
CDY04809	Canola	nucleus	15.93	52.76
GSMUA_Achr1P26590_001	Banana	nucleus	45.22	52.19
Bra036641.1-P	Field mustard	nucleus	9.26	51.69
TraesCS6D01G249500.1	Wheat	plastid	57.66	51.35
CDX94564	Canola	nucleus	15.48	51.26
VIT_05s0077g01770.t01	Wine grape	plastid	51.14	50.91
PGSC0003DMT400003012	Potato	nucleus	47.5	50.48
Solyc01g065580.2.1	Tomato	nucleus	47.5	50.48
AT3G16810.1	Thale cress	nucleus	46.89	48.21
CDY34785	Canola	extracellular	9.86	47.79
CDX92099	Canola	nucleus	45.98	47.12
Bra022180.1-P	Field mustard	nucleus	45.98	47.12
CDX95901	Canola	nucleus	46.59	47.01
KRH65810	Soybean	nucleus	8.04	43.09
KRG88602	Soybean	nucleus	8.04	43.09
GSMUA_Achr1P26600_001	Banana	extracellular	12.29	38.21

Protein Annotations

Gene3D:1.25.10.10	MapMan:17.1.1.9.3	EntrezGene:4334667	ProteinID:AAO39852.1	ProteinID:AAP46231.1	ProteinID:ABF99704.1
InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:BAF13705.1	ProteinID:BAS87199.1	InterPro:CPL_dom	ProteinID:EEE60230.1
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006412
GO:GO:0006417	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0019538	InterPro:IPR001313	InterPro:IPR011989
InterPro:IPR033133	EnsemblPlantsGene:Os03g0831100	EnsemblPlants:Os03t0831100-01	PFAM:PF08144	PFscan:PS50303	PANTHER:PTHR13389
InterPro:PUM-HD	InterPro:Pumilio_RNA-bd_rpt	UniProt:Q850Z4	SMART:SM00025	SUPFAM:SSF48371	UniParc:UPI0000002CD0
RefSeq:XP_015631977.1	SEG:seg	:	:	:	:

Description

Armadillo-like helical domain containing protein. (Os03t0831100-01)

Coordinates

chr3:-:34906648..34912027

Molecular Weight (calculated)

73330.3 Da

IEP (calculated)

10.149

GRAVY (calculated)

-0.374

Length

659 amino acids

Sequence
(BLAST)

001: MAGGGDLQSP KKRKRDAAGK PKTLAKGGDD GKKRKRPSDA NMAQGGGGGE VKVKKEPVTA KEKRLAAKEM AESRKKKRKR NYSLEKELTV LWEKMRCHNV
101: SSTERSKLVS EALRKMDGKY SEIAGSHVTA RVLQTCVKLC SQSERDAIFE ALQPDLLTLS LKKYAVFLVK KLIKRATKKQ FEWFISSLHG RVAKLLRHTI
201: GASVVDFAYQ LATPPQKRRL LLELYSTELQ LFTDLTGQKT HSLLETISNL GLQKSSVLQH MTTVIYPILE KGIVEYPIVH TAVLEYFTIA DKTSATDVIR
301: QFIPLLTQGS SAIDGDEPSV APELQKKLKA KKKRLTEPLL VRIMNTREGL KIGVSCLKHG SAKDRKKIIK SLKGHIMKLA LSDYGCILLV AILSVVDDTK
401: LVTKIVIQEL AKHLKQLIFD KNGRRPLLQL LHPNCSRYLP PADLACLNYR VPSLISKDEA SESAAEDIPE NKVDVATNKE QDGSESMQSA SDSKKDPFQR
501: RHELLIKSEL AEVLIQTLIE NVGELLRTNF GKDVLHEVAV GGEDNILEGI TDRIHSLHNA IASDAARPKA EDTEHAFDNY HSSRLIRRLI LESPAFAAIL
601: WKKALEGKCK TWADGHSSKV VAAFLESPDS KVRDLAKAEL QPLVDRGILK ISDHKAVEK

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.