Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G364900.3 | Wheat | nucleus | 96.08 | 95.09 |
| TraesCS5B01G508600.1 | Wheat | nucleus | 92.3 | 91.7 |
| HORVU5Hr1G115980.56 | Barley | endoplasmic reticulum | 51.44 | 77.71 |
| TraesCS5D01G508600.2 | Wheat | cytosol, nucleus, plasma membrane | 75.46 | 77.48 |
| TraesCS5D01G508700.1 | Wheat | nucleus | 63.19 | 74.01 |
| TraesCS6D01G249500.1 | Wheat | plastid | 68.93 | 71.35 |
| Os03t0831100-01 | Rice | nucleus | 53.52 | 62.22 |
| EER90567 | Sorghum | cytosol | 48.83 | 57.36 |
| Zm00001d034750_P004 | Maize | nucleus | 48.56 | 53.68 |
| KRH50793 | Soybean | endoplasmic reticulum | 37.34 | 45.11 |
| KRH02300 | Soybean | nucleus | 37.08 | 44.58 |
| Solyc01g065580.2.1 | Tomato | nucleus | 35.38 | 43.71 |
| VIT_05s0077g01770.t01 | Wine grape | plastid | 37.6 | 43.5 |
| PGSC0003DMT400003012 | Potato | nucleus | 35.12 | 43.39 |
| CDY04809 | Canola | nucleus | 11.1 | 42.71 |
| GSMUA_Achr1P26570_001 | Banana | nucleus | 37.08 | 41.83 |
| CDX94564 | Canola | nucleus | 10.84 | 41.71 |
| Bra036641.1-P | Field mustard | nucleus | 6.27 | 40.68 |
| CDX92099 | Canola | nucleus | 33.81 | 40.28 |
| Bra022180.1-P | Field mustard | nucleus | 33.68 | 40.12 |
| AT3G16810.1 | Thale cress | nucleus | 33.55 | 40.09 |
| CDX95901 | Canola | nucleus | 33.81 | 39.66 |
| GSMUA_Achr1P26590_001 | Banana | nucleus | 29.11 | 39.05 |
| CDY34785 | Canola | extracellular | 6.79 | 38.24 |
| GSMUA_Achr1P26600_001 | Banana | extracellular | 9.53 | 34.43 |
| Zm00001d017902_P001 | Maize | nucleus | 5.22 | 33.33 |
| KRH65810 | Soybean | nucleus | 4.83 | 30.08 |
| KRG88602 | Soybean | nucleus | 4.31 | 26.83 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G508500.3 | EnsemblPlantsGene:TraesCS5D01G508500 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0031047 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:IPR001313 | InterPro:IPR011989 | InterPro:Pumilio_RNA-bd_rpt | InterPro:Znf-XS_domain | PANTHER:PTHR13389 |
| PFAM:PF03470 | SEG:seg | SMART:SM00025 | SUPFAM:SSF48371 | MapMan:17.1.1.9.3 | : |
Description
No Description!
Coordinates
chr5D:-:533639636..533645153
Molecular Weight (calculated)
85732.1 Da
IEP (calculated)
9.111
GRAVY (calculated)
-0.294
Length
766 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGGPPGS KKRKRVAARR SKAKRAKGKK PYEAPAARGG GSTLEPQPVT AMDERVAAEE MSESREPDCN LDKELKVLCV KLRYHNMSTS RRCRLVTEAL
101: RKMDGKYLEI ARSPTACVLQ LCVKWCSHSE RDPVFVALQP HLLDLSLDEH TVFLVHNIIK MATRKQFASF IYSLRGHVAS LLCHTIGAAV LDHAFCQATR
201: PQKRSLLLEL YSTELQLSND LKEEKPCRFS LLNIISKLGL QKSSVLQHMT TVIQPVLEKG IVEYSIVHTV ILEYLTIADK TSALDVIRQL IPHLTQGTYA
301: VDELSGVARF LGKSEVEKKR SSKPLLIQIM QTKEGLKLGL ACLKHGLAED RKRIIKSLKW RIMKLALSDY GCLFVICLLS IVDNTELVTE VVIDVLKKQL
401: KELIFDKNGR HPLLQLFHPL CSRYLTLGEL FYLNYNVPSL VSKVNFGSKL DDVADKEHGG SEDTLVASDS KEDPIKRQQE LLVKSELYEV LIETCIENVG
501: QLLRTNFGKD VLYEVAVGGK NSFLEGVTDR IHVLHNAIAC DAARPRTDDG DEHAFDNYHS SRTIRRMILD CPAFAATLWK TALEGKCKLY ADGFSSMVVG
601: AYLESPDSMV KDLAKSELQL LIDGGILKPQ EHKAEEKSAM ECSSDESSEL SDTDTGYHAK KAYKDLKSGK LVARFGTDRF RCPFCPEKKK LDYRYRELVQ
701: HVIVMGASKR PWKVRANHRA LAKHLETDHT DAPGSSSMPL RQAEALYLSK IKRSQAGARS TCKPGR
101: RKMDGKYLEI ARSPTACVLQ LCVKWCSHSE RDPVFVALQP HLLDLSLDEH TVFLVHNIIK MATRKQFASF IYSLRGHVAS LLCHTIGAAV LDHAFCQATR
201: PQKRSLLLEL YSTELQLSND LKEEKPCRFS LLNIISKLGL QKSSVLQHMT TVIQPVLEKG IVEYSIVHTV ILEYLTIADK TSALDVIRQL IPHLTQGTYA
301: VDELSGVARF LGKSEVEKKR SSKPLLIQIM QTKEGLKLGL ACLKHGLAED RKRIIKSLKW RIMKLALSDY GCLFVICLLS IVDNTELVTE VVIDVLKKQL
401: KELIFDKNGR HPLLQLFHPL CSRYLTLGEL FYLNYNVPSL VSKVNFGSKL DDVADKEHGG SEDTLVASDS KEDPIKRQQE LLVKSELYEV LIETCIENVG
501: QLLRTNFGKD VLYEVAVGGK NSFLEGVTDR IHVLHNAIAC DAARPRTDDG DEHAFDNYHS SRTIRRMILD CPAFAATLWK TALEGKCKLY ADGFSSMVVG
601: AYLESPDSMV KDLAKSELQL LIDGGILKPQ EHKAEEKSAM ECSSDESSEL SDTDTGYHAK KAYKDLKSGK LVARFGTDRF RCPFCPEKKK LDYRYRELVQ
701: HVIVMGASKR PWKVRANHRA LAKHLETDHT DAPGSSSMPL RQAEALYLSK IKRSQAGARS TCKPGR
001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
Arabidopsis Description
APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.