Factsheet for HORVU5Hr1G115980.56

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
endoplasmic reticulum 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	endoplasmic reticulum, plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
TargetP:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	21.7	67.07
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	74.95	56.63
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	74.56	55.34
TraesCS6D01G249500.1	Wheat	plastid	80.08	54.86
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	76.73	52.14
HORVU5Hr1G116330.1	Barley	cytosol	10.65	51.92
TraesCS5D01G508500.3	Wheat	nucleus	77.71	51.44
TraesCS5B01G508600.1	Wheat	nucleus	77.51	50.97
TraesCS4A01G364900.3	Wheat	nucleus	77.32	50.65
Os03t0831100-01	Rice	nucleus	63.12	48.56
EER90567	Sorghum	cytosol	58.58	45.55
Zm00001d034750_P004	Maize	nucleus	58.97	43.15
Bra036641.1-P	Field mustard	nucleus	9.86	42.37
CDY04809	Canola	nucleus	16.17	41.21
CDX94564	Canola	nucleus	15.78	40.2
CDY34785	Canola	extracellular	10.65	39.71
KRH02300	Soybean	nucleus	46.15	36.73
KRH50793	Soybean	endoplasmic reticulum	45.76	36.59
VIT_05s0077g01770.t01	Wine grape	plastid	46.55	35.65
Solyc01g065580.2.1	Tomato	nucleus	43.0	35.16
PGSC0003DMT400003012	Potato	nucleus	42.6	34.84
CDX92099	Canola	nucleus	43.39	34.21
Bra022180.1-P	Field mustard	nucleus	43.2	34.06
CDX95901	Canola	nucleus	43.59	33.84
AT3G16810.1	Thale cress	nucleus	41.22	32.61
GSMUA_Achr1P26570_001	Banana	nucleus	43.59	32.55
GSMUA_Achr1P26600_001	Banana	extracellular	13.61	32.55
GSMUA_Achr1P26590_001	Banana	nucleus	32.15	28.55
KRH65810	Soybean	nucleus	0.39	1.63
KRG88602	Soybean	nucleus	0.39	1.63
Zm00001d017902_P001	Maize	nucleus	0.2	0.83

Protein Annotations

EnsemblPlants:HORVU5Hr1G115980.56	EnsemblPlantsGene:HORVU5Hr1G115980	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR001313	InterPro:IPR011989	InterPro:Pumilio_RNA-bd_rpt
PANTHER:PTHR13389	PFscan:PS50302	SEG:seg	SMART:SM00025	SUPFAM:SSF48371	UniParc:UPI000B46D4C2
UniProt:A0A287SUS7	MapMan:17.1.1.9.3	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:647454023..647457619

Molecular Weight (calculated)

56936.8 Da

IEP (calculated)

8.174

GRAVY (calculated)

0.020

Length

507 amino acids

Sequence
(BLAST)

001: CLFEVPLAFT NVPLVCGCSQ SRTVCLVVSS LHGHVASLLR HTIGASVVDC AFHQATRPQK RSLLLELYST ELQLSKDLAQ EKPCRLSVLN IISKLGLQKS
101: SVLQHMTTVI QPVLEKGIVQ YSIAHMVILE YLTIADKTSA LDVIRQLIPH LTRGSSFLDE DVIGQLIPHL TPMKSKAKKK RSSEPLLIRI MQTKEGLKLG
201: LACLKHGLAK DRKRIIKSLK GHIMKLALDD YGCLFVICLL SIVDNTELVI EVVVDELKKQ LKELIFDKNG RRPLLQLFHP LCSRYMTPRE LFYLNYNVPS
301: LVSKKFVFVC LFQVNLDSEL DDVAAKAYGG SEDTLVASDS KKDPIKWRQE LLVRSELYEV LIETCIENVG ELLRTNFGKD VLYEVAVGGK NNFLEGVTDR
401: IHVLHNAIAC DAARPRTDYV DEHAFDDYPS HLIRRIILDC PAFAATLWKK ALKGKCKLYA EGFSSRVVAA YLESPDSRVK DLAKYELQPL IDGGILKPQV
501: HEAEENH

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.