Factsheet for HORVU5Hr1G116320.7

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G508700.1	Wheat	nucleus	90.31	92.66
TraesCS4A01G364800.1	Wheat	nucleus	89.42	91.74
TraesCS5B01G508700.1	Wheat	cytosol	89.57	91.62
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	90.31	88.73
TraesCS4B01G020400.1	Wheat	nucleus	62.15	86.51
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	56.63	74.95
Os03t0831100-01	Rice	nucleus	71.53	72.84
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	16.54	67.68
EER90567	Sorghum	cytosol	65.42	67.33
Zm00001d034750_P004	Maize	nucleus	65.42	63.35
HORVU5Hr1G116330.1	Barley	cytosol	8.94	57.69
KRH02300	Soybean	nucleus	49.78	52.43
KRH50793	Soybean	endoplasmic reticulum	48.88	51.73
GSMUA_Achr1P26570_001	Banana	nucleus	51.71	51.1
VIT_05s0077g01770.t01	Wine grape	plastid	50.22	50.91
GSMUA_Achr1P26590_001	Banana	nucleus	41.73	49.04
Solyc01g065580.2.1	Tomato	nucleus	45.16	48.87
PGSC0003DMT400003012	Potato	nucleus	44.56	48.23
Zm00001d017902_P001	Maize	nucleus	8.35	46.67
CDX92099	Canola	nucleus	44.71	46.66
Bra022180.1-P	Field mustard	nucleus	44.41	46.35
AT3G16810.1	Thale cress	nucleus	44.11	46.18
CDX95901	Canola	nucleus	44.26	45.48
Bra036641.1-P	Field mustard	nucleus	7.6	43.22
CDY04809	Canola	nucleus	12.67	42.71
CDX94564	Canola	nucleus	12.37	41.71
KRH65810	Soybean	nucleus	7.45	40.65
KRG88602	Soybean	nucleus	7.45	40.65
CDY34785	Canola	extracellular	8.2	40.44
GSMUA_Achr1P26600_001	Banana	extracellular	11.33	35.85

Protein Annotations

Gene3D:1.25.10.10	MapMan:17.1.1.9.3	UniProt:A0A287SUX8	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:CPL_dom
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:HORVU5Hr1G116320
EnsemblPlants:HORVU5Hr1G116320.7	InterPro:IPR001313	InterPro:IPR011989	InterPro:IPR033133	PFAM:PF08144	PFscan:PS50302
PFscan:PS50303	InterPro:PUM-HD	InterPro:Pumilio_RNA-bd_rpt	SMART:SM00025	SUPFAM:SSF48371	UniParc:UPI000B47F3CB
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:647651855..647657268

Molecular Weight (calculated)

74903.5 Da

IEP (calculated)

9.831

GRAVY (calculated)

-0.271

Length

671 amino acids

Sequence
(BLAST)

001: PGANKRKREA AGRPKAPSKG AADATKRKKT YDPPAPSAKP QPVTAKDKRV AAKEMSESRK MKRKPNYNLE KELAVLWEKM RCRDVSKENR SKYVSLLKSC
101: ELQLMFNFLC RCVCHLHRLV TEALRKMDGK YFEIAGSHVT ARVLQTCVKW CSQSERDAVF AALQPHLLHL SRKKYAVFLV KKLIKLATKK QLALFISSLH
201: GHVASLLRHT IGAAVIDCAF HQATPPQKRS LLLELYSTEL QLFKDLTEQK SCSLLETISK LGLQKSSVLQ YMTTVIQPVL EKGIVEYSIV HTVILEYLTI
301: ADKTSASDVI RQLTPHLTQG SSVVDGEELS GVAEVPTKSK AKKKRSSEPL LIRIMQTREG LKLGLACLKH GSAKDRKKII KSLKGQVMKL ALSDYGCLFL
401: ACLLSIVDDT KLVTKVVIEE LSKQLKEIIF DKNGRRPLLQ LLHPLCSRYL TPTDLICLNY RVPSLISKDE ASESAINVNL DSKLDDVADK EHGGSEDTLV
501: ASDSKKDPFK RRQELLVKSE LCEVLIETCI ENVGELLRTN FGKDLLYEVA TGGKNNVLEG VTDRIHVLHN AIASDAARPR TEDVEHAFDN YHSSRVIRKM
601: ILDCPAFAAT LWKNALEGKC KLYADGFSSK VVAAYLESPD SKVKDLARSE VQPLIDSGIL KIPDRKAAEK K

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.