Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G508700.1 | Wheat | nucleus | 98.17 | 98.17 |
| TraesCS5B01G508700.1 | Wheat | cytosol | 96.94 | 96.65 |
| HORVU5Hr1G070120.8 | Barley | cytosol, nucleus, plasma membrane | 94.65 | 90.63 |
| HORVU5Hr1G116320.7 | Barley | cytosol, nucleus | 91.74 | 89.42 |
| Os03t0831100-01 | Rice | nucleus | 74.31 | 73.75 |
| EER90567 | Sorghum | cytosol | 67.74 | 67.94 |
| Zm00001d034750_P004 | Maize | nucleus | 67.43 | 63.64 |
| TraesCS4A01G364900.3 | Wheat | nucleus | 72.94 | 61.63 |
| KRH02300 | Soybean | nucleus | 51.99 | 53.38 |
| KRH50793 | Soybean | endoplasmic reticulum | 51.22 | 52.84 |
| GSMUA_Achr1P26570_001 | Banana | nucleus | 53.82 | 51.84 |
| VIT_05s0077g01770.t01 | Wine grape | plastid | 51.83 | 51.21 |
| Solyc01g065580.2.1 | Tomato | nucleus | 47.55 | 50.16 |
| GSMUA_Achr1P26590_001 | Banana | nucleus | 43.73 | 50.09 |
| PGSC0003DMT400003012 | Potato | nucleus | 47.09 | 49.68 |
| Zm00001d017902_P001 | Maize | nucleus | 8.87 | 48.33 |
| CDX92099 | Canola | nucleus | 47.09 | 47.9 |
| Bra022180.1-P | Field mustard | nucleus | 46.79 | 47.59 |
| AT3G16810.1 | Thale cress | nucleus | 46.18 | 47.11 |
| CDX95901 | Canola | nucleus | 46.33 | 46.4 |
| CDY04809 | Canola | nucleus | 13.61 | 44.72 |
| KRH65810 | Soybean | nucleus | 8.41 | 44.72 |
| Bra036641.1-P | Field mustard | nucleus | 7.95 | 44.07 |
| CDX94564 | Canola | nucleus | 13.3 | 43.72 |
| KRG88602 | Soybean | nucleus | 8.1 | 43.09 |
| CDY34785 | Canola | extracellular | 8.41 | 40.44 |
| GSMUA_Achr1P26600_001 | Banana | extracellular | 11.77 | 36.32 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G364800.1 | EnsemblPlantsGene:TraesCS4A01G364800 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:ARM-like | InterPro:ARM-type_fold | InterPro:CPL_dom | InterPro:IPR001313 | InterPro:IPR011989 |
| InterPro:IPR033133 | InterPro:PUM-HD | InterPro:Pumilio_RNA-bd_rpt | PANTHER:PTHR13389 | PFAM:PF08144 | PFscan:PS50302 |
| PFscan:PS50303 | SEG:seg | SMART:SM00025 | SUPFAM:SSF48371 | MapMan:17.1.1.9.3 | : |
Description
No Description!
Coordinates
chr4A:+:638169511..638174692
Molecular Weight (calculated)
72492.3 Da
IEP (calculated)
9.982
GRAVY (calculated)
-0.334
Length
654 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGDHPGA NKRKREAAGR PKAPSKGAGP GDAAKRKKTY DAPAAKPKPQ PVTAKEKRVA AKEMSESRKM KRKPNYNLEK ELAVLWEKMR CRDVSKENRS
101: KLVTEALRKM DGKYFEIAGS HVTARVLQTC VKWCSQPERD AVFVALQPHL LHLSRKKYAV FLVKKLIKLA TKKQLALFIS SLHGHVASLL RHTIGAAVVD
201: CTFHQATPPQ KRSLLLELYS TELQLFKDLT EQKSCSLLET ISKLGLQKSS VLQYMTTVIQ PLLEKGIVEY SIVHTVILEY LTIADKTSAS DVIRQLIPHL
301: TQGSSVVDGD ELSGVAEVPT KSKAKKKRSS EPLLIRIMQT REGLKIGLAC LKHGSAKDRK KIIKSLKGQN MKLALGDYGC LFLACLLSIV DDTKLVTKVV
401: IDELTNHLKE LIFDKNGRRP LLQLLHPLCS RYLTPTDLNC LKYSVPSLVS KDEASESATK VNLDSKLDDV ADKEHGGSED TLVASDSKKD PFKRRQELLV
501: KSELFEVLIE TCIENVGELL RTNFGKDVLY EVAVGGKNNV LEGVTDRVHV LHNAIASDAA RPRTEDVEHA FDNYHSSRVI RKMILDCPEF AATLWKKALK
601: GKCKSFADGF SSKVVAAYLE SPDSKVKDLA KSEVQLLIDG GILKNPDHKA AEKK
101: KLVTEALRKM DGKYFEIAGS HVTARVLQTC VKWCSQPERD AVFVALQPHL LHLSRKKYAV FLVKKLIKLA TKKQLALFIS SLHGHVASLL RHTIGAAVVD
201: CTFHQATPPQ KRSLLLELYS TELQLFKDLT EQKSCSLLET ISKLGLQKSS VLQYMTTVIQ PLLEKGIVEY SIVHTVILEY LTIADKTSAS DVIRQLIPHL
301: TQGSSVVDGD ELSGVAEVPT KSKAKKKRSS EPLLIRIMQT REGLKIGLAC LKHGSAKDRK KIIKSLKGQN MKLALGDYGC LFLACLLSIV DDTKLVTKVV
401: IDELTNHLKE LIFDKNGRRP LLQLLHPLCS RYLTPTDLNC LKYSVPSLVS KDEASESATK VNLDSKLDDV ADKEHGGSED TLVASDSKKD PFKRRQELLV
501: KSELFEVLIE TCIENVGELL RTNFGKDVLY EVAVGGKNNV LEGVTDRVHV LHNAIASDAA RPRTEDVEHA FDNYHSSRVI RKMILDCPEF AATLWKKALK
601: GKCKSFADGF SSKVVAAYLE SPDSKVKDLA KSEVQLLIDG GILKNPDHKA AEKK
001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
Arabidopsis Description
APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.