Factsheet for GSMUA_Achr1P26570_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P26590_001	Banana	nucleus	70.4	83.71
GSMUA_Achr1P26600_001	Banana	extracellular	19.0	60.85
VIT_05s0077g01770.t01	Wine grape	plastid	54.05	55.44
KRH50793	Soybean	endoplasmic reticulum	51.55	55.2
Os03t0831100-01	Rice	nucleus	53.46	55.08
TraesCS4B01G020400.1	Wheat	nucleus	38.88	54.77
KRH02300	Soybean	nucleus	50.66	54.0
TraesCS5D01G508700.1	Wheat	nucleus	51.84	53.82
TraesCS4A01G364800.1	Wheat	nucleus	51.84	53.82
TraesCS5B01G508700.1	Wheat	cytosol	51.55	53.35
EER90567	Sorghum	cytosol	50.81	52.91
PGSC0003DMT400003012	Potato	nucleus	47.86	52.42
Solyc01g065580.2.1	Tomato	nucleus	47.42	51.94
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	51.1	51.71
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	51.1	50.81
Zm00001d034750_P004	Maize	nucleus	50.96	49.93
CDX92099	Canola	nucleus	45.51	48.06
Bra022180.1-P	Field mustard	nucleus	45.36	47.9
AT3G16810.1	Thale cress	nucleus	45.21	47.89
CDX95901	Canola	nucleus	45.8	47.63
Zm00001d017902_P001	Maize	nucleus	8.25	46.67
Bra036641.1-P	Field mustard	nucleus	7.95	45.76
CDY04809	Canola	nucleus	13.4	45.73
KRG88602	Soybean	nucleus	8.25	45.53
CDX94564	Canola	nucleus	13.11	44.72
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	10.6	43.9
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	32.55	43.59
KRH65810	Soybean	nucleus	7.66	42.28
CDY34785	Canola	extracellular	8.39	41.91
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	43.3	39.41
TraesCS5D01G508500.3	Wheat	nucleus	41.83	37.08
TraesCS5B01G508600.1	Wheat	nucleus	41.68	36.71
TraesCS4A01G364900.3	Wheat	nucleus	41.68	36.56
TraesCS6D01G249500.1	Wheat	plastid	39.76	36.49

Protein Annotations

EnsemblPlants:GSMUA_Achr1P26570_001	EnsemblPlants:GSMUA_Achr1T26570_001	EnsemblPlantsGene:GSMUA_Achr1G26570_001	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:ARM-type_fold	InterPro:IPR001313	InterPro:IPR033133	InterPro:PUM-HD	InterPro:Pumilio_RNA-bd_rpt
PANTHER:PTHR13389	PFscan:PS50302	PFscan:PS50303	SEG:seg	SMART:SM00025	SUPFAM:SSF48371
UniParc:UPI0002952ED3	UniProt:M0S3B4	MapMan:17.1.1.9.3	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G26570_001]

Coordinates

chr1:+:22161946..22174860

Molecular Weight (calculated)

75819.0 Da

IEP (calculated)

10.015

GRAVY (calculated)

-0.285

Length

679 amino acids

Sequence
(BLAST)

001: MAAVGEIGGS KKRKREPSAA KGGGKPKLTQ LKNAASKPAN LKTQGFKKQP KAFELKPGKP TKFGDETAVQ AKKEPKTPRE RRLAAKEMAE TRKKKRKPNY
101: NLEKELASLW EKMRCYNVGK QARSELVSEA LRKMNGKFVE IAGSHVAARV LQTCVKYCTQ EERDAVFEAL RPHLLALSRK KYAVHLVKKL LDHASKKQLE
201: WFISSLHGHV TSLLRHSVGS AVIDYVFHLA NGSQKQILLM EMYSTELQLF KDLTLTNSGR LVDIISKLGL QKSSVLQHMM SVIQSLLEKG IVDHSIIHKA
301: LMEFFTIADK SSAADVIQQL LPLLVRESAS AEESPYFSAP EMQKKRKIKN KNVKEPLLAR MIRTRDGLKI CILCVKHASA KERKKVIKGI KGHVRKLSLD
401: QLGSLLLVCV LSVVDDTKLV TKIVIREMQT MLKELVLDKN GRRTVLQLLH PQCSRYFAPE DLACLSLSAE ETEDPMEVGL EQCQNGEAPM TDNENSEVGR
501: KSVQLDTVGK KDSFRRRCEL MVESGLAEQL VYCVITTKAT IDRRCDSLGF FLILAVGGSD GILQSFADRM DALHKAIASL AALPKTNESQ EEHVLENFHS
601: SRLIRKLILD CPGFAATLWE MALDGKCDVW AQGHSCKVLL AFLESSISEV KDLAKPELQP LMDRGVLKAP ENRLVEKGV

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.