CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034750_P004	Maize	nucleus	86.5	81.39
Zm00001d017902_P001	Maize	nucleus	14.11	76.67
Os03t0831100-01	Rice	nucleus	72.09	71.32
TraesCS5D01G508700.1	Wheat	nucleus	68.25	68.04
TraesCS4A01G364800.1	Wheat	nucleus	67.94	67.74
TraesCS5B01G508700.1	Wheat	cytosol	67.79	67.38
TraesCS4B01G020400.1	Wheat	nucleus	49.54	67.01
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	67.33	65.42
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	67.94	64.86
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	45.55	58.58
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	13.34	53.05
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	58.9	51.47
GSMUA_Achr1P26570_001	Banana	nucleus	52.91	50.81
KRH02300	Soybean	nucleus	49.23	50.39
KRH50793	Soybean	endoplasmic reticulum	48.93	50.32
GSMUA_Achr1P26590_001	Banana	nucleus	42.94	49.04
TraesCS5B01G508600.1	Wheat	nucleus	57.98	49.03
TraesCS4A01G364900.3	Wheat	nucleus	57.98	48.84
TraesCS5D01G508500.3	Wheat	nucleus	57.36	48.83
PGSC0003DMT400003012	Potato	nucleus	46.17	48.55
Solyc01g065580.2.1	Tomato	nucleus	45.71	48.06
VIT_05s0077g01770.t01	Wine grape	plastid	48.77	48.04
TraesCS6D01G249500.1	Wheat	plastid	53.83	47.43
AT3G16810.1	Thale cress	nucleus	45.25	46.02
Bra022180.1-P	Field mustard	nucleus	44.79	45.41
CDX92099	Canola	nucleus	44.63	45.26
CDY04809	Canola	nucleus	13.65	44.72
CDX95901	Canola	nucleus	44.79	44.72
Bra036641.1-P	Field mustard	nucleus	7.98	44.07
CDX94564	Canola	nucleus	13.34	43.72
KRG88602	Soybean	nucleus	7.67	40.65
KRH65810	Soybean	nucleus	7.67	40.65
CDY34785	Canola	extracellular	8.44	40.44
GSMUA_Achr1P26600_001	Banana	extracellular	12.12	37.26

Protein Annotations

Gene3D:1.25.10.10	MapMan:17.1.1.9.3	EntrezGene:8080200	InterPro:ARM-like	InterPro:ARM-type_fold	UniProt:C5WTZ2
InterPro:CPL_dom	EnsemblPlants:EER90567	ProteinID:EER90567	ProteinID:EER90567.1	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006412	GO:GO:0006417	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009987	GO:GO:0019538	InterPro:IPR001313	InterPro:IPR011989	InterPro:IPR033133	PFAM:PF08144
PFscan:PS50302	PFscan:PS50303	PANTHER:PTHR13389	InterPro:PUM-HD	InterPro:Pumilio_RNA-bd_rpt	SMART:SM00025
EnsemblPlantsGene:SORBI_3001G024000	SUPFAM:SSF48371	unigene:Sbi.3613	UniParc:UPI0001A825C3	RefSeq:XP_002463569.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:1902840..1909071

Molecular Weight (calculated)

72886.5 Da

IEP (calculated)

9.983

GRAVY (calculated)

-0.276

Length

652 amino acids

Sequence
(BLAST)

001: MAGGGDRQGA KKRKREHAEG KAKPRPQVKG GGDGGKRKKH SAADGGAGEA VARKKTPVTH KEKRIAAKEM SEARKMKRKR HYSLEKELTK LWEKMRCHDV
101: SKEERSKVVS EAIKKMDGKY LDIATSHITA RVLQTCVKWC SQSERDAIFD VLHPHLLDLS RKKYAVFLVK KLIELASKKQ FASFISSLHG RVAKLLHHTI
201: GAAVVDYAFQ RGTKRQKKQL LLELYSTELQ LFQDLTLQSS CCLIDTISKL GLQLSSVLQY MTIVIHKILE KGTVEYSIVH TAILEYFTIA DKTSASDVIC
301: QLIPLLTQGA LIIDGDEPSN APELPKKTKA KKKRSKEPLI VRIMQTREGL KLGIGCLKHG SAKDRKKIIK SLKGHILKLA LSDFGCLFLI CILSIVDDTK
401: LVSKIVIQEL AKHLKQLIFD KNGRRPLLQL LNPLCSRYLS PDDLACLNYN VPSLSPKEGD TSENVVNGMT DEDPNGLVVM QIVSESKKDP LQRRHELLVK
501: TELAEALIQS CLENVGELLR TNFGKEILYE IVVGGKDNIL EGLTDRIHML HDAIVSDAAQ PKTEDIEHAF ENFFSSRVIR RMIIDCPAFA VTLWRKVLEG
601: KCKIWAEGYS SKVVAGFLES PSKEVKDLAK PELQPLVDAG ILKVPDPKVV QK

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.