Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G508700.1 | Wheat | nucleus | 90.92 | 94.95 |
| TraesCS4A01G364800.1 | Wheat | nucleus | 90.63 | 94.65 |
| TraesCS5B01G508700.1 | Wheat | cytosol | 90.34 | 94.05 |
| HORVU5Hr1G116320.7 | Barley | cytosol, nucleus | 88.73 | 90.31 |
| TraesCS4B01G020400.1 | Wheat | nucleus | 62.52 | 88.59 |
| HORVU5Hr1G115980.56 | Barley | endoplasmic reticulum | 55.34 | 74.56 |
| Os03t0831100-01 | Rice | nucleus | 71.01 | 73.6 |
| EER90567 | Sorghum | cytosol | 64.86 | 67.94 |
| HORVU5Hr1G116000.1 | Barley | cytosol, plastid, vacuole | 16.11 | 67.07 |
| Zm00001d034750_P004 | Maize | nucleus | 64.57 | 63.64 |
| HORVU5Hr1G116330.1 | Barley | cytosol | 8.35 | 54.81 |
| KRH02300 | Soybean | nucleus | 49.34 | 52.9 |
| KRH50793 | Soybean | endoplasmic reticulum | 48.76 | 52.52 |
| GSMUA_Achr1P26570_001 | Banana | nucleus | 50.81 | 51.1 |
| VIT_05s0077g01770.t01 | Wine grape | plastid | 49.49 | 51.06 |
| Zm00001d017902_P001 | Maize | nucleus | 8.78 | 50.0 |
| Solyc01g065580.2.1 | Tomato | nucleus | 45.1 | 49.68 |
| GSMUA_Achr1P26590_001 | Banana | nucleus | 41.43 | 49.56 |
| PGSC0003DMT400003012 | Potato | nucleus | 44.66 | 49.19 |
| CDX92099 | Canola | nucleus | 44.8 | 47.59 |
| Bra022180.1-P | Field mustard | nucleus | 44.51 | 47.28 |
| AT3G16810.1 | Thale cress | nucleus | 44.07 | 46.96 |
| CDX95901 | Canola | nucleus | 44.22 | 46.25 |
| CDY04809 | Canola | nucleus | 12.88 | 44.22 |
| Bra036641.1-P | Field mustard | nucleus | 7.61 | 44.07 |
| CDX94564 | Canola | nucleus | 12.59 | 43.22 |
| KRH65810 | Soybean | nucleus | 7.76 | 43.09 |
| KRG88602 | Soybean | nucleus | 7.61 | 42.28 |
| CDY34785 | Canola | extracellular | 8.2 | 41.18 |
| GSMUA_Achr1P26600_001 | Banana | extracellular | 11.42 | 36.79 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G070120.8 | EnsemblPlantsGene:HORVU5Hr1G070120 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:ARM-like | InterPro:ARM-type_fold | InterPro:CPL_dom | InterPro:IPR001313 | InterPro:IPR011989 |
| InterPro:IPR033133 | InterPro:PUM-HD | InterPro:Pumilio_RNA-bd_rpt | PFAM:PF08144 | PFscan:PS50303 | SEG:seg |
| SMART:SM00025 | SUPFAM:SSF48371 | UniParc:UPI000296D89E | UniProt:M0XVP9 | MapMan:17.1.1.9.3 | : |
Description
No Description!
Coordinates
chrchr5H:-:527108011..527113991
Molecular Weight (calculated)
75632.5 Da
IEP (calculated)
10.097
GRAVY (calculated)
-0.258
Length
683 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGDHPGA NKRKREAAGR PKAPSKGGGD ATKRKKTHDA PAAKAKPQPV TAKGKRVAAK EMSESRKMKR KPNYNLEKEL AVLWEKMRCR DVSKENRSKL
101: VTEALRKMDG KYFEIAGSHV TARVLQTCVK WCSQPERDAV FVALQPHLLH FSRKKYAVFL VKKLIKLGKV LYNSLKTRMS SYMITLIASL TYLLFVTAAT
201: KKQLALFISS LHGHVASLLR HTIGAAVVDC TFHQATPPQK RSLLLELYST ELQLFKDLTE QKSCSLLETI SKLGLQKSSV LQYMTTVIQP VLEKGIVEYS
301: IVHTVILEYL TIADKTSASD VIRQLIPHLT QGSSVVDGDE LSGVAEVPTK SKAKKKRSSE PLLIRIMQTR EGLKLGLACL KHGSAKDRKK IIKSLKGQVM
401: KLALSDYGCL FLACLLSIVD DTKLLTKVVI EELTKQLKEL IFDKNGRRPL LQLLHPLCSR YLTPTDLSCL KYSVPSLISK DEASEGAAKV NLDSKLDDVA
501: EKEHGGSEDT LVASDSKKDP FKRRQELLVK SELFEVLIET CIENVGELLR ANFGKDVLYE VAIGGKNNVL EGVTDRIHVL HNAIASDAAR PRTEDVEHAF
601: DNYHSSRVIR KMVLDCPAFA ATLWEKALKG KSKSFADGFS SKVVAAYLES PDSKVKDLAK SEVQPLIDGG MLKIPDHKAA EKK
101: VTEALRKMDG KYFEIAGSHV TARVLQTCVK WCSQPERDAV FVALQPHLLH FSRKKYAVFL VKKLIKLGKV LYNSLKTRMS SYMITLIASL TYLLFVTAAT
201: KKQLALFISS LHGHVASLLR HTIGAAVVDC TFHQATPPQK RSLLLELYST ELQLFKDLTE QKSCSLLETI SKLGLQKSSV LQYMTTVIQP VLEKGIVEYS
301: IVHTVILEYL TIADKTSASD VIRQLIPHLT QGSSVVDGDE LSGVAEVPTK SKAKKKRSSE PLLIRIMQTR EGLKLGLACL KHGSAKDRKK IIKSLKGQVM
401: KLALSDYGCL FLACLLSIVD DTKLLTKVVI EELTKQLKEL IFDKNGRRPL LQLLHPLCSR YLTPTDLSCL KYSVPSLISK DEASEGAAKV NLDSKLDDVA
501: EKEHGGSEDT LVASDSKKDP FKRRQELLVK SELFEVLIET CIENVGELLR ANFGKDVLYE VAIGGKNNVL EGVTDRIHVL HNAIASDAAR PRTEDVEHAF
601: DNYHSSRVIR KMVLDCPAFA ATLWEKALKG KSKSFADGFS SKVVAAYLES PDSKVKDLAK SEVQPLIDGG MLKIPDHKAA EKK
001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
Arabidopsis Description
APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.