Factsheet for GSMUA_Achr1P26590_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P26570_001	Banana	nucleus	83.71	70.4
TraesCS4B01G020400.1	Wheat	nucleus	38.18	45.23
Os03t0831100-01	Rice	nucleus	52.19	45.22
Zm00001d017902_P001	Maize	nucleus	9.46	45.0
KRG88602	Soybean	nucleus	9.46	43.9
VIT_05s0077g01770.t01	Wine grape	plastid	50.79	43.81
TraesCS4A01G364800.1	Wheat	nucleus	50.09	43.73
TraesCS5D01G508700.1	Wheat	nucleus	49.74	43.43
KRH50793	Soybean	endoplasmic reticulum	48.16	43.38
TraesCS5B01G508700.1	Wheat	cytosol	49.74	43.29
KRH02300	Soybean	nucleus	48.16	43.17
EER90567	Sorghum	cytosol	49.04	42.94
PGSC0003DMT400003012	Potato	nucleus	46.23	42.58
KRH65810	Soybean	nucleus	9.11	42.28
Solyc01g065580.2.1	Tomato	nucleus	45.88	42.26
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	49.04	41.73
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	49.56	41.43
CDX92099	Canola	nucleus	45.53	40.44
AT3G16810.1	Thale cress	nucleus	45.36	40.41
Bra022180.1-P	Field mustard	nucleus	45.36	40.28
Zm00001d034750_P004	Maize	nucleus	48.16	39.68
CDX95901	Canola	nucleus	45.36	39.66
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	28.55	32.15
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	41.16	31.5
TraesCS5D01G508500.3	Wheat	nucleus	39.05	29.11
TraesCS5B01G508600.1	Wheat	nucleus	38.88	28.79
TraesCS4A01G364900.3	Wheat	nucleus	38.53	28.42
TraesCS6D01G249500.1	Wheat	plastid	36.43	28.11
Bra036641.1-P	Field mustard	nucleus	5.43	26.27
CDY34785	Canola	extracellular	6.13	25.74
CDY04809	Canola	nucleus	6.83	19.6
CDX94564	Canola	nucleus	6.83	19.6
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	2.8	9.76
GSMUA_Achr1P26600_001	Banana	extracellular	3.5	9.43

Protein Annotations

EnsemblPlants:GSMUA_Achr1P26590_001	EnsemblPlants:GSMUA_Achr1T26590_001	EnsemblPlantsGene:GSMUA_Achr1G26590_001	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:ARM-type_fold	InterPro:IPR001313	InterPro:IPR033133	InterPro:PUM-HD	InterPro:Pumilio_RNA-bd_rpt
PANTHER:PTHR13389	PFscan:PS50302	PFscan:PS50303	SEG:seg	SMART:SM00025	SUPFAM:SSF48371
UniParc:UPI0002957995	UniProt:M0S3B6	MapMan:17.1.1.9.3	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G26590_001]

Coordinates

chr1:+:22179288..22188289

Molecular Weight (calculated)

63950.4 Da

IEP (calculated)

10.133

GRAVY (calculated)

-0.337

Length

571 amino acids

Sequence
(BLAST)

001: MAVVGEVGGS KKRKREPSAA KGGGKPKLMQ LKNAVSKPAK LKTQGFKKPS KAFELKSGKP TKAGDEATVQ AKKEPKTSRE RRLAAKEMAE TRKKKRKPNY
101: NLEKELASLW EKMRCYNVGK QARSELVSEA LCKMNGKFVE IAGSHVAARV LQTCVKYCTQ EERDAVFEAL RPHLLPLSQK KYAVHLVKKL LDHASKKQLE
201: WFISSLHGHV TSLLRHSVGS AVIDYVFHLA NGSQKQILLM EMYSTELQLF KDLTLTNSGR LVDIISKLGL QKSSVLQHIM SVIQPLLEKG IVDHSIIHKA
301: LMEFFTIADK SSAADVIQQL LPLLVRESAS AEESPHFSAP EMQKKRKIKN KNVKEPLLAR MIRTRDGLKI CILCVKHASA KERKKVIKGI KGHVRKLSLD
401: QLGSLLLVCV LSVVDDTKLV TKIVIRELQT MLKDLVLDKN GRRTVLQLLH PQCSRYFASE DLACLSLSVE ETEDPMEVGL EQCQNGESPM TDNENSEVGR
501: KSLQLDTGGK KDSFRRRCEL MVESGLAETQ FQTAKYEVGG GDTGEFCQAL GHIQYSGWIW FDSPILFFLT F

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.