Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G508500.3 | Wheat | nucleus | 95.09 | 96.08 |
| TraesCS5B01G508600.1 | Wheat | nucleus | 92.12 | 92.48 |
| HORVU5Hr1G115980.56 | Barley | endoplasmic reticulum | 50.65 | 77.32 |
| TraesCS4A01G364800.1 | Wheat | nucleus | 61.63 | 72.94 |
| Os03t0831100-01 | Rice | nucleus | 53.36 | 62.67 |
| EER90567 | Sorghum | cytosol | 48.84 | 57.98 |
| Zm00001d034750_P004 | Maize | nucleus | 48.45 | 54.11 |
| KRH50793 | Soybean | endoplasmic reticulum | 36.69 | 44.8 |
| KRH02300 | Soybean | nucleus | 36.3 | 44.11 |
| Solyc01g065580.2.1 | Tomato | nucleus | 35.01 | 43.71 |
| PGSC0003DMT400003012 | Potato | nucleus | 34.75 | 43.39 |
| VIT_05s0077g01770.t01 | Wine grape | plastid | 37.08 | 43.35 |
| CDY04809 | Canola | nucleus | 10.85 | 42.21 |
| GSMUA_Achr1P26570_001 | Banana | nucleus | 36.56 | 41.68 |
| CDX94564 | Canola | nucleus | 10.59 | 41.21 |
| CDX92099 | Canola | nucleus | 33.46 | 40.28 |
| Bra022180.1-P | Field mustard | nucleus | 33.33 | 40.12 |
| Bra036641.1-P | Field mustard | nucleus | 6.07 | 39.83 |
| CDY34785 | Canola | extracellular | 6.98 | 39.71 |
| CDX95901 | Canola | nucleus | 33.46 | 39.66 |
| AT3G16810.1 | Thale cress | nucleus | 32.82 | 39.63 |
| GSMUA_Achr1P26590_001 | Banana | nucleus | 28.42 | 38.53 |
| GSMUA_Achr1P26600_001 | Banana | extracellular | 9.43 | 34.43 |
| Zm00001d017902_P001 | Maize | nucleus | 5.3 | 34.17 |
| KRH65810 | Soybean | nucleus | 4.78 | 30.08 |
| KRG88602 | Soybean | nucleus | 4.13 | 26.02 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G364900.3 | EnsemblPlantsGene:TraesCS4A01G364900 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0031047 | InterPro:ARM-type_fold | InterPro:IPR001313 |
| InterPro:Pumilio_RNA-bd_rpt | InterPro:Znf-XS_domain | PANTHER:PTHR13389 | PFAM:PF03470 | SEG:seg | SMART:SM00025 |
| SUPFAM:SSF48371 | MapMan:17.1.1.9.3 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:638213514..638218791
Molecular Weight (calculated)
86454.9 Da
IEP (calculated)
9.291
GRAVY (calculated)
-0.306
Length
774 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGGPPGS KKRKRVAARR SKVKRAKGKK PYEASAARGG GGGGSKEEPQ PVTAMDERVA AEEMSESREP DCNLDKELKV LCVKLRYHNM STNRRGRLVT
101: EALRKMDGKY LEIARSPTAC VLQLCVKWCS HSERDPVFVA LQPHLLDLSL NEHTVFLVHN IIKMATRKQF ASFIYSLRGH VASLLCHTIG AAVLDHAFCQ
201: ATRPHKRSLL LELYSTELQL SNDLKEEKPC RFSLLNIISK LGLQKSSVLQ HMTTVVQPVL EKGIVEYSIV HTVILEYLTI ADKTSALDVI RQLIPHLTQG
301: TYAVDELSGV ARFLGKSEVE KKRSSKPLLI QIMQTKEGLK LGLACLKHGL AEDRKRIIKS LKGRIMKLAL SDYGCLFVIC LLSIVDNTEL VTEVVIDVLK
401: KQLKELIFDK LLVEQNGRHP LLQLFHPLCS RYLTLGELFY LNYNVPSLVS KVNFGSKLDD VADKEHGGSE DTLIASDSKE DPIKRRQELL VKSELYEVLI
501: ETCIENVGQL LRTNFGKDVL YEVSVGGKNN FLEGVTDRIH VLHNAIACDA ARPRTDDGDE HAFDNYHSSR TIRRMILDCP AFAATLWKTA LEGKCKLYAD
601: GFSSMVLAAY LESPNSGVKD LAKSELQPLI DGGILKPQDH KAEEKSAMEC SSDESSELSD TDTGYHAKKA YKDLKSGKLV ARFGTDRFRC PFCPEKKQLD
701: YRYRELIRHV IVVGASRRPW KVRANHRALA KHLETDHADA PGSSSMPLRQ AEALYLSKIK RSQAGARSTC KLSR
101: EALRKMDGKY LEIARSPTAC VLQLCVKWCS HSERDPVFVA LQPHLLDLSL NEHTVFLVHN IIKMATRKQF ASFIYSLRGH VASLLCHTIG AAVLDHAFCQ
201: ATRPHKRSLL LELYSTELQL SNDLKEEKPC RFSLLNIISK LGLQKSSVLQ HMTTVVQPVL EKGIVEYSIV HTVILEYLTI ADKTSALDVI RQLIPHLTQG
301: TYAVDELSGV ARFLGKSEVE KKRSSKPLLI QIMQTKEGLK LGLACLKHGL AEDRKRIIKS LKGRIMKLAL SDYGCLFVIC LLSIVDNTEL VTEVVIDVLK
401: KQLKELIFDK LLVEQNGRHP LLQLFHPLCS RYLTLGELFY LNYNVPSLVS KVNFGSKLDD VADKEHGGSE DTLIASDSKE DPIKRRQELL VKSELYEVLI
501: ETCIENVGQL LRTNFGKDVL YEVSVGGKNN FLEGVTDRIH VLHNAIACDA ARPRTDDGDE HAFDNYHSSR TIRRMILDCP AFAATLWKTA LEGKCKLYAD
601: GFSSMVLAAY LESPNSGVKD LAKSELQPLI DGGILKPQDH KAEEKSAMEC SSDESSELSD TDTGYHAKKA YKDLKSGKLV ARFGTDRFRC PFCPEKKQLD
701: YRYRELIRHV IVVGASRRPW KVRANHRALA KHLETDHADA PGSSSMPLRQ AEALYLSKIK RSQAGARSTC KLSR
001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
Arabidopsis Description
APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.