Factsheet for VIT_05s0077g01770.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50793	Soybean	endoplasmic reticulum	64.65	67.51
KRH02300	Soybean	nucleus	64.2	66.72
Solyc01g065580.2.1	Tomato	nucleus	62.24	66.45
PGSC0003DMT400003012	Potato	nucleus	62.08	66.29
CDX92099	Canola	nucleus	59.52	61.28
Bra022180.1-P	Field mustard	nucleus	59.37	61.12
AT3G16810.1	Thale cress	nucleus	58.31	60.22
CDX95901	Canola	nucleus	59.37	60.18
CDY04809	Canola	nucleus	17.22	57.29
CDX94564	Canola	nucleus	16.77	55.78
GSMUA_Achr1P26570_001	Banana	nucleus	55.44	54.05
KRG88602	Soybean	nucleus	9.82	52.85
Bra036641.1-P	Field mustard	nucleus	9.37	52.54
TraesCS5D01G508700.1	Wheat	nucleus	51.51	52.14
KRH65810	Soybean	nucleus	9.67	52.03
TraesCS4A01G364800.1	Wheat	nucleus	51.21	51.83
TraesCS5B01G508700.1	Wheat	cytosol	51.21	51.68
Os03t0831100-01	Rice	nucleus	50.91	51.14
GSMUA_Achr1P26590_001	Banana	nucleus	43.81	50.79
TraesCS4B01G020400.1	Wheat	nucleus	36.71	50.41
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	50.91	50.22
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	51.06	49.49
EER90567	Sorghum	cytosol	48.04	48.77
CDY34785	Canola	extracellular	9.82	47.79
Zm00001d034750_P004	Maize	nucleus	48.94	46.75
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	35.65	46.55
GSMUA_Achr1P26600_001	Banana	extracellular	14.35	44.81
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	10.73	43.29
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	45.02	39.95
TraesCS6D01G249500.1	Wheat	plastid	42.75	38.24
TraesCS5D01G508500.3	Wheat	nucleus	43.5	37.6
Zm00001d017902_P001	Maize	nucleus	6.8	37.5
TraesCS5B01G508600.1	Wheat	nucleus	43.2	37.09
TraesCS4A01G364900.3	Wheat	nucleus	43.35	37.08

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100255113	wikigene:100255113	MapMan:17.1.1.9.3	EMBL:AM426654	InterPro:ARM-like
InterPro:ARM-type_fold	ProteinID:CAN62467	ProteinID:CAN62467.1	ProteinID:CBI22952	ProteinID:CBI22952.3	InterPro:CPL_dom
ncoils:Coil	UniProt:D7SY95	EMBL:FN595246	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006412	GO:GO:0006417	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0019538	InterPro:IPR001313	InterPro:IPR011989	InterPro:IPR033133	EntrezGene:LOC100255113	wikigene:LOC100255113
PFAM:PF08144	PFscan:PS50302	PFscan:PS50303	PANTHER:PTHR13389	InterPro:PUM-HD	InterPro:Pumilio_RNA-bd_rpt
SMART:SM00025	SUPFAM:SSF48371	TIGR:TC60337	UniParc:UPI0001BE1EB4	ArrayExpress:VIT_05s0077g01770	EnsemblPlantsGene:VIT_05s0077g01770
EnsemblPlants:VIT_05s0077g01770.t01	RefSeq:XP_002271110	RefSeq:XP_002271110.1	RefSeq:XP_010649565.1	SEG:seg	:

Description

No Description!

Coordinates

chr5:+:1400074..1407777

Molecular Weight (calculated)

73290.7 Da

IEP (calculated)

9.856

GRAVY (calculated)

-0.451

Length

662 amino acids

Sequence
(BLAST)

001: MAAKTQQSNK SNKRKQITGP HSKSDTSPSK KPKLLQSKSS NPGNKGLNKP FKSFKQQRPV KSHSGKLETA GANEGPKSKR ERRLHAKELT EARKKKRKKH
101: YTLEQELASL WEKMRRRNIA KEDRSRLVSE ALHKMKGKIP EIAGSHVSSR VLQTCVKYCT QAERDAVFEE LQPQLLTLAC NTYAVHLVKK MLDNASKKHL
201: AAFMSSLHGH VASLLRHMVG SVVVEHAYQL GNATQKQELL MELYATELQL FKDLASVKES RLIDVISKLG LQKGSVLRHM SSVIQPILEK GIVDHSIIHR
301: ALMEYLSIAD KSSAAEVIQQ LSGALLVRMI HTRDGSRIGL LCIKHGSAKE RKKIIKGMKG HIDKIAHDQC GSMVLAYILS TVDDTKLLTK VIIRELQAIL
401: KELLLDKNGR RVLLQLLHPN CSRYFSPEDL VSFNLSIPSL SPKSESKVNP DSVKEAKSSK TKESGDEETK GDLEVTTAEA NENTSPSESH HIAEGGKKDP
501: NLRRQELLVD SGLAENLIDT CIESAGELLR SNFGKEVMYE VATGGAGGIL RPALDEKLDA LHGAIASLAA QPKSEESEEE HVLENFHSSR TIRKLVLDCP
601: TFASTLWKIA LGGKCEMWAQ GHSHKVVLAF LEASDSEVCE LAKGELQPLI DSGILKIPET KQ

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.