CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02300	Soybean	nucleus	93.85	93.41
KRH44120	Soybean	mitochondrion	14.04	71.77
KRH65810	Soybean	nucleus	13.72	70.73
KRG88602	Soybean	nucleus	13.25	68.29
VIT_05s0077g01770.t01	Wine grape	plastid	67.51	64.65
Solyc01g065580.2.1	Tomato	nucleus	61.04	62.42
PGSC0003DMT400003012	Potato	nucleus	60.88	62.26
Bra022180.1-P	Field mustard	nucleus	56.31	55.52
CDX92099	Canola	nucleus	56.31	55.52
AT3G16810.1	Thale cress	nucleus	55.84	55.23
CDX95901	Canola	nucleus	56.31	54.67
Os03t0831100-01	Rice	nucleus	53.94	51.9
GSMUA_Achr1P26570_001	Banana	nucleus	55.2	51.55
TraesCS4A01G364800.1	Wheat	nucleus	52.84	51.22
TraesCS5D01G508700.1	Wheat	nucleus	52.68	51.07
TraesCS5B01G508700.1	Wheat	cytosol	52.68	50.91
CDY04809	Canola	nucleus	15.77	50.25
CDX94564	Canola	nucleus	15.77	50.25
TraesCS4B01G020400.1	Wheat	nucleus	38.17	50.21
EER90567	Sorghum	cytosol	50.32	48.93
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	51.73	48.88
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	52.52	48.76
GSMUA_Achr1P26590_001	Banana	nucleus	43.38	48.16
Bra036641.1-P	Field mustard	nucleus	8.68	46.61
Zm00001d034750_P004	Maize	nucleus	50.95	46.61
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	36.59	45.76
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	11.51	44.51
CDY34785	Canola	extracellular	9.31	43.38
GSMUA_Achr1P26600_001	Banana	extracellular	13.25	39.62
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	45.58	38.74
TraesCS5D01G508500.3	Wheat	nucleus	45.11	37.34
TraesCS4A01G364900.3	Wheat	nucleus	44.8	36.69
TraesCS5B01G508600.1	Wheat	nucleus	44.48	36.58
TraesCS6D01G249500.1	Wheat	plastid	41.8	35.81
Zm00001d017902_P001	Maize	nucleus	6.31	33.33

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100815996	MapMan:17.1.1.9.3	EMBL:ACUP02004716	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:CPL_dom	EnsemblPlantsGene:GLYMA_07G244300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006412	GO:GO:0006417	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	UniProt:I1KMV6	InterPro:IPR001313	InterPro:IPR011989	InterPro:IPR033133	EnsemblPlants:KRH50793
ProteinID:KRH50793	ProteinID:KRH50793.1	PFAM:PF08144	PFscan:PS50302	PFscan:PS50303	PANTHER:PTHR13389
InterPro:PUM-HD	InterPro:Pumilio_RNA-bd_rpt	SMART:SM00025	SUPFAM:SSF48371	UniParc:UPI0002338AC5	:

Description

hypothetical protein

Coordinates

chr7:+:42386498..42393046

Molecular Weight (calculated)

70910.5 Da

IEP (calculated)

10.014

GRAVY (calculated)

-0.329

Length

634 amino acids

Sequence
(BLAST)

001: MAAKKQDAGD TKKRKRLNTE APKASKLVAS KKHKPDSVAK DNKNKKTAPL TGRERRLHAK ELADARKKKR KRHFTLEQEL ARLWEKMRRH KIAKEDRAKL
101: VTEALRKMKG KIPEIVGSHI SSRVLQTCVK HCSQAERDAV FEELRPHFLT LAFSAYAVHL VKKMLDNASK KQLAGFISTL RGHVAPLLRH MVGSIVVEHA
201: YELANAAQKQ ELLSELYSTE LQLFKDLVSL KESRLSDVMS KLGLQKGSVL RHMTSVIQPI LEKGIVDHSI LHRVLMEYFS IADKSSVTDI IQQLSSPLIV
301: RMIGTRDGAK IGILCVKYGN AKERKKIIKG LKGHIDKTAY HQYGCMVLVC ILSVVDDTKL ITKVIIRELQ SILKELVLDK NGRRLLLQLL HPNSSRYFSP
401: DDLASLNLSI PSLSLKDQSE ASFLTETSKV SLGDKESKED IEVAVDEVNK DKTSADDSDL AESGKKDPFV RRQELLIKSG LADSLLDICI ESVGELIRSN
501: FGKEVLYEVA TGGSDGIMHP VLDDKINSLH NAVASLAALP KSEDSQEEHV LENFHSSRTI RKLILDCPNF ASTLWEKALK GKSELWVHGH SCKVISAFLE
601: SPDPTVLKLV KKELQPLIDI GILKNPKPIE QANQ

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.