CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50793	Soybean	endoplasmic reticulum	93.41	93.85
KRG88602	Soybean	nucleus	15.7	81.3
KRH65810	Soybean	nucleus	15.54	80.49
KRH44120	Soybean	mitochondrion	13.97	71.77
VIT_05s0077g01770.t01	Wine grape	plastid	66.72	64.2
Solyc01g065580.2.1	Tomato	nucleus	59.81	61.45
PGSC0003DMT400003012	Potato	nucleus	59.34	60.97
Bra022180.1-P	Field mustard	nucleus	55.73	55.21
CDX92099	Canola	nucleus	55.73	55.21
AT3G16810.1	Thale cress	nucleus	55.1	54.76
CDX95901	Canola	nucleus	55.89	54.52
TraesCS4A01G364800.1	Wheat	nucleus	53.38	51.99
Os03t0831100-01	Rice	nucleus	53.69	51.9
TraesCS5D01G508700.1	Wheat	nucleus	53.22	51.83
TraesCS5B01G508700.1	Wheat	cytosol	53.38	51.83
GSMUA_Achr1P26570_001	Banana	nucleus	54.0	50.66
TraesCS4B01G020400.1	Wheat	nucleus	38.15	50.41
CDY04809	Canola	nucleus	15.7	50.25
CDX94564	Canola	nucleus	15.7	50.25
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	52.43	49.78
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	52.9	49.34
EER90567	Sorghum	cytosol	50.39	49.23
Bra036641.1-P	Field mustard	nucleus	8.95	48.31
GSMUA_Achr1P26590_001	Banana	nucleus	43.17	48.16
Zm00001d034750_P004	Maize	nucleus	51.49	47.33
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	36.73	46.15
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	11.62	45.12
CDY34785	Canola	extracellular	9.58	44.85
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	46.31	39.54
GSMUA_Achr1P26600_001	Banana	extracellular	13.03	39.15
TraesCS5D01G508500.3	Wheat	nucleus	44.58	37.08
TraesCS5B01G508600.1	Wheat	nucleus	44.43	36.71
TraesCS4A01G364900.3	Wheat	nucleus	44.11	36.3
TraesCS6D01G249500.1	Wheat	plastid	41.92	36.08
Zm00001d017902_P001	Maize	nucleus	6.59	35.0

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100780739	MapMan:17.1.1.9.3	EMBL:ACUP02010302	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:CPL_dom	EnsemblPlantsGene:GLYMA_17G029600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006412	GO:GO:0006417	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	UniProt:I1MRL9	InterPro:IPR001313	InterPro:IPR011989	InterPro:IPR033133	EnsemblPlants:KRH02300
ProteinID:KRH02300	ProteinID:KRH02300.1	PFAM:PF08144	PFscan:PS50302	PFscan:PS50303	PANTHER:PTHR13389
InterPro:PUM-HD	InterPro:Pumilio_RNA-bd_rpt	SMART:SM00025	SUPFAM:SSF48371	UniParc:UPI000233EC42	:

Description

hypothetical protein

Coordinates

chr17:-:2174403..2181055

Molecular Weight (calculated)

71136.5 Da

IEP (calculated)

9.872

GRAVY (calculated)

-0.383

Length

637 amino acids

Sequence
(BLAST)

001: MAAKKHDAGD TKKRKRLNTE THEAPKASKL VASKKHKPDS VAKDNKNKKT APLTGRERRL HSKELADARK KKRKRHFTLE QELARLWEKM RRHEIAKEDR
101: AKLVTEALQK MKGKIPEIAG SHISSRILQT CVKHCSQAER DAVFEELQPH FLTLAYSAYA VHLVKKMLDN ASKKQLAGFI STLHGHVAPL LRHMVGSVVV
201: EHAYELANAA QKQELLSELY STELRLFKDL VSLKESRLLD VMSKLGLQKG SVLRHMASVI QPILEKGIVD HSILHRVLLE YFSIADKSSV TDIIQQLSSP
301: LIVRMIGTRD GAKIGILCVK YGNAKERKKI IKGLKGHIDK TAYHQYGCMV LVCILSVVDD TKLITKVIIR ELQSILKELV LDKNGRRPLL QLLHPNSSRY
401: FSPDDLASLN LSIPSLSLKD QSEASSLTET SKVSLGDKES KDDIELALNE VNKDKTSVDD SDLAESGKKD PFVRRQELLI KSGLADSLLD ICIESVGELI
501: QSNFGKEVLY EVATGGSEGI MHPALGDKIN SLHNAVASLA AMPKSEDSQE EHVLENFHSS RTIRKLILDC PNFASTLWEK ALKGKSELWV HGHSCKVISA
601: FLESPDPTVQ KLVKKELQPL IDNGILKNPK PKEQANQ

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.