Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G508700.1 | Wheat | cytosol | 87.97 | 64.63 |
| HORVU5Hr1G070120.8 | Barley | cytosol, nucleus, plasma membrane | 88.59 | 62.52 |
| HORVU5Hr1G116320.7 | Barley | cytosol, nucleus | 86.51 | 62.15 |
| Os03t0831100-01 | Rice | nucleus | 71.58 | 52.35 |
| EER90567 | Sorghum | cytosol | 67.01 | 49.54 |
| Zm00001d034750_P004 | Maize | nucleus | 65.35 | 45.45 |
| Zm00001d017902_P001 | Maize | nucleus | 10.79 | 43.33 |
| TraesCS5B01G508600.1 | Wheat | nucleus | 67.01 | 41.89 |
| KRG88602 | Soybean | nucleus | 10.58 | 41.46 |
| KRH65810 | Soybean | nucleus | 10.37 | 40.65 |
| GSMUA_Achr1P26570_001 | Banana | nucleus | 54.77 | 38.88 |
| GSMUA_Achr1P26590_001 | Banana | nucleus | 45.23 | 38.18 |
| KRH50793 | Soybean | endoplasmic reticulum | 50.21 | 38.17 |
| KRH02300 | Soybean | nucleus | 50.41 | 38.15 |
| VIT_05s0077g01770.t01 | Wine grape | plastid | 50.41 | 36.71 |
| PGSC0003DMT400003012 | Potato | nucleus | 46.68 | 36.29 |
| Solyc01g065580.2.1 | Tomato | nucleus | 46.47 | 36.13 |
| Bra036641.1-P | Field mustard | nucleus | 8.3 | 33.9 |
| AT3G16810.1 | Thale cress | nucleus | 44.61 | 33.54 |
| CDX92099 | Canola | nucleus | 44.19 | 33.13 |
| Bra022180.1-P | Field mustard | nucleus | 43.98 | 32.97 |
| CDX95901 | Canola | nucleus | 43.15 | 31.85 |
| CDY34785 | Canola | extracellular | 8.92 | 31.62 |
| CDY04809 | Canola | nucleus | 11.0 | 26.63 |
| CDX94564 | Canola | nucleus | 10.79 | 26.13 |
| GSMUA_Achr1P26600_001 | Banana | extracellular | 11.2 | 25.47 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G020400.1 | EnsemblPlantsGene:TraesCS4B01G020400 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | PANTHER:PTHR13389 |
| SUPFAM:SSF48371 | MapMan:17.1.1.9.3 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:14391446..14396423
Molecular Weight (calculated)
54098.1 Da
IEP (calculated)
10.442
GRAVY (calculated)
-0.228
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGGDHPDA NKRKREAAGR SKAPSKGATK RSKTYGAPAA KAEPQPVTAK DKRVAAKEMS ESRKMKRKPN YNLEKELAVL WEKMRCDVSK ENRSKLVTKA
101: LRKMDGKYFE IAGSHVTARV LQTCVKWCSQ PERDAVFVAL QPHLLHLSHK KYAVFLVKKL IKTRLLETIS KLGLHKSSVL QYMATVIQPV LEKGIVEYAI
201: VHVVILEYLT IADKTSALDV IRQLIPHLTQ GSSVVDGDEL SGVAEVPTKS KAKKKRSSEP FLIRIMQTRE GLKLGLACLK HGSRRKKIIK SLKGQVMKLA
301: LSYYGCLFLA CLLSIVDDTK LVTKVVIEEL TKQLKELIFD KNGRRPLLQL LHPLCSRYLT PTDLICLKYR VPSLISKVLI ETCIENVGEL LRTNFGKDIL
401: YEHAFDNYHS SRIIRKMILD CPAFAATLWK KALKGKCKPF ADGFSSKVVA AYMESPDSKV EDLAKSEAQP LIKRRRPCLH VG
101: LRKMDGKYFE IAGSHVTARV LQTCVKWCSQ PERDAVFVAL QPHLLHLSHK KYAVFLVKKL IKTRLLETIS KLGLHKSSVL QYMATVIQPV LEKGIVEYAI
201: VHVVILEYLT IADKTSALDV IRQLIPHLTQ GSSVVDGDEL SGVAEVPTKS KAKKKRSSEP FLIRIMQTRE GLKLGLACLK HGSRRKKIIK SLKGQVMKLA
301: LSYYGCLFLA CLLSIVDDTK LVTKVVIEEL TKQLKELIFD KNGRRPLLQL LHPLCSRYLT PTDLICLKYR VPSLISKVLI ETCIENVGEL LRTNFGKDIL
401: YEHAFDNYHS SRIIRKMILD CPAFAATLWK KALKGKCKPF ADGFSSKVVA AYMESPDSKV EDLAKSEAQP LIKRRRPCLH VG
001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
Arabidopsis Description
APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.