CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022180.1-P	Field mustard	nucleus	98.13	98.13
CDX95901	Canola	nucleus	92.85	91.42
CDY04809	Canola	nucleus	26.59	85.93
CDX94564	Canola	nucleus	26.28	84.92
AT3G16810.1	Thale cress	nucleus	72.94	73.17
CDY34785	Canola	extracellular	14.77	69.85
VIT_05s0077g01770.t01	Wine grape	plastid	61.28	59.52
PGSC0003DMT400003012	Potato	nucleus	56.3	58.39
Solyc01g065580.2.1	Tomato	nucleus	55.21	57.26
KRH50793	Soybean	endoplasmic reticulum	55.52	56.31
KRH02300	Soybean	nucleus	55.21	55.73
TraesCS5D01G508700.1	Wheat	nucleus	47.9	47.09
TraesCS4A01G364800.1	Wheat	nucleus	47.9	47.09
TraesCS5B01G508700.1	Wheat	cytosol	47.9	46.95
Os03t0831100-01	Rice	nucleus	47.12	45.98
GSMUA_Achr1P26590_001	Banana	nucleus	40.44	45.53
GSMUA_Achr1P26570_001	Banana	nucleus	48.06	45.51
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	47.59	44.8
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	46.66	44.71
EER90567	Sorghum	cytosol	45.26	44.63
TraesCS4B01G020400.1	Wheat	nucleus	33.13	44.19
KRH65810	Soybean	nucleus	8.4	43.9
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	34.21	43.39
Zm00001d034750_P004	Maize	nucleus	45.57	42.28
KRG88602	Soybean	nucleus	8.09	42.28
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	9.64	37.8
TraesCS6D01G249500.1	Wheat	plastid	40.28	35.0
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	40.59	34.99
TraesCS5D01G508500.3	Wheat	nucleus	40.28	33.81
TraesCS4A01G364900.3	Wheat	nucleus	40.28	33.46
TraesCS5B01G508600.1	Wheat	nucleus	39.97	33.33
GSMUA_Achr1P26600_001	Banana	extracellular	10.89	33.02
Zm00001d017902_P001	Maize	nucleus	6.07	32.5

Protein Annotations

MapMan:17.1.1.9.3	GO:A0A078DUI4	InterPro:ARM-type_fold	EnsemblPlants:CDX92099	ProteinID:CDX92099	ProteinID:CDX92099.1
InterPro:CPL_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00153787001	InterPro:IPR001313	InterPro:IPR033133	PFAM:PF08144	PFscan:PS50302	PFscan:PS50303
PANTHER:PTHR13389	InterPro:PUM-HD	InterPro:Pumilio_RNA-bd_rpt	SMART:SM00025	SUPFAM:SSF48371	UniParc:UPI0004EE185B
SEG:seg	:	:	:	:	:

Description

BnaA05g23080D

Coordinates

chrLK031871:-:176722..180530

Molecular Weight (calculated)

71845.8 Da

IEP (calculated)

9.213

GRAVY (calculated)

-0.467

Length

643 amino acids

Sequence
(BLAST)

001: MSSKGLKPTK RKDNESSEKP DALKSKKPKL APSNNTIQNQ KPGGQEHGKP KSFGNNDKSS VTLSKKERRV QAKELTEARK KRRKPHYTLE QELATLWEKM
101: RRRDIGKEDR LKLISEAIQK MKGKMHEIAG SHVSSRVLQT CLKYCSQDEK DVVFKELHPH FLSLASNTYA VHVLQKMLDG ASKQQLSACI SSLRGHVASL
201: LRHMVGSVVV DHAYHLGNAA QKQELLGELY STELQLFKDL NSTSEKRVVD IIAKLGLQKG SVIRHMTAIV QPILEKGIVD HNITHKLLIE YMTVADKTSA
301: AFVIQQLSGP LLIRMVHTRD GSRLAMLCVK HGSAKERKKL IKAMKTEKDS HVGSIASDQY GSMVLACIFS IVDDTKLVTK IIVRELEANL KDLVMGKNGR
401: RPLLQLLHPN SSRYFSRDDL ASLELSVPSL CLMDKSETKD SDGKESAEEE KDEQEDTVTE ESGLEENVTI AGSKKDPLLR RQELLVKSGL AERLIDVCVE
501: NAEEFLKSNF AKEVMYEVAV GGCDGILLPT LSENLRELYQ AIASVAAEPK PEESEKSSQH ILEDFHSSRT IRRLVLDSPT FASILFKKAL SGKCRSWAQG
601: HCSRILSAFL ETQDVQVREM AKEELQVLVD EGALKITGTK KPE

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.