Factsheet for TraesCS6D01G249500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	54.86	80.08
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	72.3	71.72
TraesCS5D01G508500.3	Wheat	nucleus	71.35	68.93
TraesCS5D01G508700.1	Wheat	nucleus	59.32	67.13
Os03t0831100-01	Rice	nucleus	51.35	57.66
EER90567	Sorghum	cytosol	47.43	53.83
Zm00001d034750_P004	Maize	nucleus	47.43	50.65
VIT_05s0077g01770.t01	Wine grape	plastid	38.24	42.75
KRH02300	Soybean	nucleus	36.08	41.92
KRH50793	Soybean	endoplasmic reticulum	35.81	41.8
Solyc01g065580.2.1	Tomato	nucleus	34.46	41.13
PGSC0003DMT400003012	Potato	nucleus	34.32	40.97
CDX92099	Canola	nucleus	35.0	40.28
CDY04809	Canola	nucleus	10.81	40.2
AT3G16810.1	Thale cress	nucleus	34.73	40.09
Bra022180.1-P	Field mustard	nucleus	34.73	39.97
Bra036641.1-P	Field mustard	nucleus	6.35	39.83
CDX95901	Canola	nucleus	35.14	39.82
GSMUA_Achr1P26570_001	Banana	nucleus	36.49	39.76
CDX94564	Canola	nucleus	10.54	39.2
CDY34785	Canola	extracellular	6.76	36.76
GSMUA_Achr1P26590_001	Banana	nucleus	28.11	36.43
GSMUA_Achr1P26600_001	Banana	extracellular	9.32	32.55
Zm00001d017902_P001	Maize	nucleus	4.05	25.0
KRG88602	Soybean	nucleus	3.51	21.14
KRH65810	Soybean	nucleus	3.38	20.33

Protein Annotations

EnsemblPlants:TraesCS6D01G249500.1	EnsemblPlantsGene:TraesCS6D01G249500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	InterPro:ARM-type_fold	InterPro:IPR001313
InterPro:IPR033133	InterPro:PUM-HD	InterPro:Pumilio_RNA-bd_rpt	InterPro:Znf-XS_domain	PANTHER:PTHR13389	PFAM:PF03470
PFscan:PS50303	SEG:seg	SMART:SM00025	SUPFAM:SSF48371	MapMan:17.1.1.9.3	:

Description

No Description!

Coordinates

chr6D:-:352904458..352909909

Molecular Weight (calculated)

82883.3 Da

IEP (calculated)

9.101

GRAVY (calculated)

-0.307

Length

740 amino acids

Sequence
(BLAST)

001: MPSSGRSPTT PPGRAAAAPR RSRSLSPPWK SGWQPRNVLN SLWQEIFLPE SRKPDYKLVK EITVLCQKVR CCNLSGKERS KLLTEALRKM DGKYLEIAGS
101: PVAASVLKLC VQWCSQSEMD PVFVALQPHL LDLSRNKDTG FLVNYIIKGA SKEQFALFIS SLHGHVASLL HHTIGASVVD RAFHQATRPQ KRSLLLELCS
201: TELQLSKDLA QEKQCRLSVL NIISKHGLQK SSVLQHMTTI IQPVLEKGIV EYSIVHMVIS EYLTIADKTS ALDVIRQLIP HLIQGSSVLD EDVIGQLIPH
301: LTPTKSKAQK KRSKAKKKRS SELLLIRIMQ TKEGLKLGLA CLKHGLEKDR KRIIKSLKGH IRKLALNDYG CLFVICRLSI VDNTELITEV VVDELTKHLK
401: ELIFDKNGRR PLLQLFHPLC SRYLTPRELF YLNYNVPSPV SKVNLDGESD DVADKEHGGS EDTLVVSDSN PIKRRQVLLV KSELYEVLVE TCIENVGELL
501: RANFGKDVLY EVEKNNFLEG VTDRIHVLHN AIACDAARPR TDDVDEHAFD NYHSSRIIRR MVLDCPAFAA TLWKKALEGK CKLYADGFSS IMVAAYLESP
601: DSRVKDLAKA ELQPLIDGGI LKPQEHKAEE EKSAMECSSD DSSELSDTDI ADYAKKAYTD LKSGKLVARF GTDRFRCPFC PGKKQEYRYS DLLNHAIGLS
701: ASNHAAKVKA NHQALANHLK TDHADAATSS SMPVRHKLRH

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.