Factsheet for TraesCS5D01G508600.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	52.14	76.73
TraesCS5D01G508500.3	Wheat	nucleus	77.48	75.46
TraesCS5D01G508700.1	Wheat	nucleus	65.95	75.23
TraesCS6D01G249500.1	Wheat	plastid	71.72	72.3
Os03t0831100-01	Rice	nucleus	55.63	62.97
EER90567	Sorghum	cytosol	51.47	58.9
Zm00001d034750_P004	Maize	nucleus	50.94	54.83
KRH02300	Soybean	nucleus	39.54	46.31
KRH50793	Soybean	endoplasmic reticulum	38.74	45.58
VIT_05s0077g01770.t01	Wine grape	plastid	39.95	45.02
Solyc01g065580.2.1	Tomato	nucleus	36.33	43.71
PGSC0003DMT400003012	Potato	nucleus	36.06	43.39
GSMUA_Achr1P26570_001	Banana	nucleus	39.41	43.3
Bra036641.1-P	Field mustard	nucleus	6.84	43.22
CDY04809	Canola	nucleus	11.39	42.71
CDX94564	Canola	nucleus	11.13	41.71
GSMUA_Achr1P26590_001	Banana	nucleus	31.5	41.16
CDX92099	Canola	nucleus	34.99	40.59
Bra022180.1-P	Field mustard	nucleus	34.85	40.44
AT3G16810.1	Thale cress	nucleus	34.58	40.25
CDX95901	Canola	nucleus	35.12	40.12
CDY34785	Canola	extracellular	7.24	39.71
Zm00001d017902_P001	Maize	nucleus	5.76	35.83
GSMUA_Achr1P26600_001	Banana	extracellular	9.65	33.96
KRH65810	Soybean	nucleus	5.09	30.89
KRG88602	Soybean	nucleus	4.69	28.46

Protein Annotations

EnsemblPlants:TraesCS5D01G508600.2	EnsemblPlantsGene:TraesCS5D01G508600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	InterPro:ARM-type_fold	InterPro:IPR001313
InterPro:Pumilio_RNA-bd_rpt	InterPro:Znf-XS_domain	PANTHER:PTHR13389	PFAM:PF03470	PFscan:PS50302	SEG:seg
SMART:SM00025	SUPFAM:SSF48371	MapMan:17.1.1.9.3	:	:	:

Description

No Description!

Coordinates

chr5D:-:533658287..533666449

Molecular Weight (calculated)

83614.4 Da

IEP (calculated)

8.589

GRAVY (calculated)

-0.280

Length

746 amino acids

Sequence
(BLAST)

001: MAGGGDHPGA KKRKRVAAGR PEAPSKRAKG KKPYEAPAAR GGGGSKEEPQ PVTAMDERVA AEEMSESRKL DNNLVKELTM LCVKMKYHNT TTIRRCRLVT
101: EALRKMDGKY LEIARSPTAC VLQSCVKWCS QSERDPVFVA LQPHLLDLSC DKYSCFLVNY IIKGASKEQF ALFISSLHGH VASLLFHTIG VSVVNCAFRL
201: ATLPQKRSLL LELYSTEFQL FKDLTEQKSC SLLETISKLG LQKSSVLQHM ATVIQTVLEK GIVEYSIVHM VILEYLIIAD KTSALDMIHQ LVPHLTRGTY
301: AVHELSGLNR LSTKSKEKEK RSSEPLLIRI MQTKEGLKLG LVCLKHGREK DRKRISKCLK GQIMKLALNG YGCLFVICLL SIVDDTELYT EVVDELTKQL
401: KELIFDKNGR RPLLQLFHPL CSRYLTPSDL VFLNYNVPSL VSKVNLDSKL DDVADKEHGG SEDTLVASDS KDLIKRQQEL LVKSELYEVL IETCIENVGE
501: LLRTNFGKDV LYEVAVGGKN NFLEGVTDRI HVLHNAIACD AARPRTDYID EHAFDNYHSS PIIRRMIFDC PAFAATLWKK ALQGKCKLYA DGFSSRVVAA
601: YLESPDSRVK DLAKSELQPL IDGGILKPQE HKAEEEKSAM ECSSDEWSEP KDTDIGDYAK KAYMDMKSGK LVVRFGTDRF TCPFCPRKKK QEYRYSGLLA
701: HAISQSSYHA AKVKANHQAL VNHLETDHAD AATSSSMPVR HKLMLL

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.