Factsheet for Bra036641.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34785	Canola	extracellular	95.76	83.09
Bra022180.1-P	Field mustard	nucleus	77.12	14.15
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	18.64	13.41
AT3G16810.1	Thale cress	nucleus	69.49	12.79
GSMUA_Achr1P26600_001	Banana	extracellular	22.88	12.74
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	42.37	9.86
VIT_05s0077g01770.t01	Wine grape	plastid	52.54	9.37
Os03t0831100-01	Rice	nucleus	51.69	9.26
KRH02300	Soybean	nucleus	48.31	8.95
PGSC0003DMT400003012	Potato	nucleus	46.61	8.87
Solyc01g065580.2.1	Tomato	nucleus	45.76	8.71
KRH50793	Soybean	endoplasmic reticulum	46.61	8.68
TraesCS4B01G020400.1	Wheat	nucleus	33.9	8.3
TraesCS5D01G508700.1	Wheat	nucleus	44.92	8.1
EER90567	Sorghum	cytosol	44.07	7.98
GSMUA_Achr1P26570_001	Banana	nucleus	45.76	7.95
TraesCS4A01G364800.1	Wheat	nucleus	44.07	7.95
TraesCS5B01G508700.1	Wheat	cytosol	44.07	7.93
Zm00001d034750_P004	Maize	nucleus	44.92	7.65
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	44.07	7.61
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	43.22	7.6
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	43.22	6.84
TraesCS6D01G249500.1	Wheat	plastid	39.83	6.35
TraesCS5D01G508500.3	Wheat	nucleus	40.68	6.27
TraesCS5B01G508600.1	Wheat	nucleus	40.68	6.23
TraesCS4A01G364900.3	Wheat	nucleus	39.83	6.07
GSMUA_Achr1P26590_001	Banana	nucleus	26.27	5.43
KRH65810	Soybean	nucleus	0.0	0.0
KRG88602	Soybean	nucleus	0.0	0.0
Zm00001d017902_P001	Maize	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:Bra036641.1	EnsemblPlants:Bra036641.1-P	EnsemblPlantsGene:Bra036641	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:CPL_dom	PFAM:PF08144	UniParc:UPI0002541A0B	UniProt:M4F6D2	MapMan:35.1

Description

AT3G16810 (E=3e-022) APUM24 | APUM24 (Arabidopsis Pumilio 24); RNA binding / binding

Coordinates

chrA09:-:5914294..5915391

Molecular Weight (calculated)

13426.0 Da

IEP (calculated)

7.421

GRAVY (calculated)

-0.786

Length

118 amino acids

Sequence
(BLAST)

001: MEKNGRRPLL QLLHPNSSRY FSRDDLASLD LISPRQRTQM AKKEKDKQED TVTEQSGLEE NLIALSGKCR SWAQGHCSRI LSAFLETQDV QVREMAKEEL
101: QVLVDEGALK ITGTKKPE

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.