Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G508700.1 | Wheat | nucleus | 97.1 | 97.4 |
| TraesCS4A01G364800.1 | Wheat | nucleus | 96.65 | 96.94 |
| HORVU5Hr1G070120.8 | Barley | cytosol, nucleus, plasma membrane | 94.05 | 90.34 |
| HORVU5Hr1G116320.7 | Barley | cytosol, nucleus | 91.62 | 89.57 |
| TraesCS4B01G020400.1 | Wheat | nucleus | 64.63 | 87.97 |
| Os03t0831100-01 | Rice | nucleus | 73.93 | 73.6 |
| EER90567 | Sorghum | cytosol | 67.38 | 67.79 |
| Zm00001d034750_P004 | Maize | nucleus | 66.77 | 63.2 |
| TraesCS5B01G508600.1 | Wheat | nucleus | 71.65 | 60.96 |
| KRH02300 | Soybean | nucleus | 51.83 | 53.38 |
| KRH50793 | Soybean | endoplasmic reticulum | 50.91 | 52.68 |
| GSMUA_Achr1P26570_001 | Banana | nucleus | 53.35 | 51.55 |
| VIT_05s0077g01770.t01 | Wine grape | plastid | 51.68 | 51.21 |
| Solyc01g065580.2.1 | Tomato | nucleus | 47.41 | 50.16 |
| GSMUA_Achr1P26590_001 | Banana | nucleus | 43.29 | 49.74 |
| PGSC0003DMT400003012 | Potato | nucleus | 46.8 | 49.52 |
| CDX92099 | Canola | nucleus | 46.95 | 47.9 |
| Bra022180.1-P | Field mustard | nucleus | 46.65 | 47.59 |
| AT3G16810.1 | Thale cress | nucleus | 46.04 | 47.11 |
| Zm00001d017902_P001 | Maize | nucleus | 8.54 | 46.67 |
| CDX95901 | Canola | nucleus | 46.34 | 46.55 |
| CDY04809 | Canola | nucleus | 13.57 | 44.72 |
| KRH65810 | Soybean | nucleus | 8.38 | 44.72 |
| Bra036641.1-P | Field mustard | nucleus | 7.93 | 44.07 |
| CDX94564 | Canola | nucleus | 13.26 | 43.72 |
| KRG88602 | Soybean | nucleus | 8.08 | 43.09 |
| CDY34785 | Canola | extracellular | 8.38 | 40.44 |
| GSMUA_Achr1P26600_001 | Banana | extracellular | 11.89 | 36.79 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G508700.1 | EnsemblPlantsGene:TraesCS5B01G508700 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:ARM-type_fold | InterPro:CPL_dom | InterPro:IPR001313 | InterPro:IPR033133 | InterPro:PUM-HD | InterPro:Pumilio_RNA-bd_rpt |
| ncoils:Coil | PANTHER:PTHR13389 | PFAM:PF08144 | PFscan:PS50302 | PFscan:PS50303 | SEG:seg |
| SMART:SM00025 | SUPFAM:SSF48371 | MapMan:17.1.1.9.3 | : | : | : |
Description
No Description!
Coordinates
chr5B:-:673934708..673939662
Molecular Weight (calculated)
72858.0 Da
IEP (calculated)
10.078
GRAVY (calculated)
-0.317
Length
656 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGDHPGA NKRKREAAGR PKAPSKGPGP GPGDAAKRKK TYDAPAAKPK PQPVTAKEKR VASKEMSESR KMKRKPNYNL EKELAVLWEK MRCRDVSKEN
101: RSKLVTEALR KMDGKYFEIA GSHVTARVLQ TCVKWCSQPE RDAVFVALQP HLLHLSRKKY AVFLVKKLIK LATKKQLALF ISSLHGHVAS LLRHTIGAAV
201: VDCAFHQATP PQKRSLLLEL YSTELQLFKD LTEQKSCSLL ETISKLGLQK SSVLQYMTTV IQPLLEKGIV EYSIVHTVIL EYLTIADKTS ALDVIRQLIP
301: HLTQGSSVVD GDELSGVAEV PTKSKAKKKR SSEPLLIRIM QTREGLKIGL ACLKHGSAKD RKKIIKSLKW QTMKLALGDY GCLFLACLLS IVDDTKLVTK
401: VVIDELTKQL KELIFDKNGR RPLLQLLHPL CSRYLTPTDL NCLKYSVPSL VSKDEASESA TKVNLDSKLD DVADKEHGGS EDTLVASDSK KDPFKRRQEL
501: LVKSELFEVL IEICIENVGE LLRTNFGKDV LYEVAVGGKN NVLEGVTDRI HVLHNAIASD AARPRTEDVE HAFDNYHSSR VIRKMILDCP AFAATLWKKA
601: LKGKCKSFAD GFSSKVVAAY LESRDSKVKD LARSEVQPLI DGGILKIPEH KAAEKK
101: RSKLVTEALR KMDGKYFEIA GSHVTARVLQ TCVKWCSQPE RDAVFVALQP HLLHLSRKKY AVFLVKKLIK LATKKQLALF ISSLHGHVAS LLRHTIGAAV
201: VDCAFHQATP PQKRSLLLEL YSTELQLFKD LTEQKSCSLL ETISKLGLQK SSVLQYMTTV IQPLLEKGIV EYSIVHTVIL EYLTIADKTS ALDVIRQLIP
301: HLTQGSSVVD GDELSGVAEV PTKSKAKKKR SSEPLLIRIM QTREGLKIGL ACLKHGSAKD RKKIIKSLKW QTMKLALGDY GCLFLACLLS IVDDTKLVTK
401: VVIDELTKQL KELIFDKNGR RPLLQLLHPL CSRYLTPTDL NCLKYSVPSL VSKDEASESA TKVNLDSKLD DVADKEHGGS EDTLVASDSK KDPFKRRQEL
501: LVKSELFEVL IEICIENVGE LLRTNFGKDV LYEVAVGGKN NVLEGVTDRI HVLHNAIASD AARPRTEDVE HAFDNYHSSR VIRKMILDCP AFAATLWKKA
601: LKGKCKSFAD GFSSKVVAAY LESRDSKVKD LARSEVQPLI DGGILKIPEH KAAEKK
001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
Arabidopsis Description
APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.