CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92099	Canola	nucleus	91.42	92.85
CDY04809	Canola	nucleus	26.34	86.43
CDX94564	Canola	nucleus	26.03	85.43
AT3G16810.1	Thale cress	nucleus	71.98	73.32
CDY34785	Canola	extracellular	14.7	70.59
VIT_05s0077g01770.t01	Wine grape	plastid	60.18	59.37
PGSC0003DMT400003012	Potato	nucleus	55.44	58.39
Solyc01g065580.2.1	Tomato	nucleus	54.52	57.42
KRH50793	Soybean	endoplasmic reticulum	54.67	56.31
KRH02300	Soybean	nucleus	54.52	55.89
Os03t0831100-01	Rice	nucleus	47.01	46.59
TraesCS5B01G508700.1	Wheat	cytosol	46.55	46.34
TraesCS4A01G364800.1	Wheat	nucleus	46.4	46.33
TraesCS5D01G508700.1	Wheat	nucleus	46.4	46.33
GSMUA_Achr1P26570_001	Banana	nucleus	47.63	45.8
KRG88602	Soybean	nucleus	8.58	45.53
GSMUA_Achr1P26590_001	Banana	nucleus	39.66	45.36
EER90567	Sorghum	cytosol	44.72	44.79
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	45.48	44.26
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	46.25	44.22
KRH65810	Soybean	nucleus	8.27	43.9
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	33.84	43.59
TraesCS4B01G020400.1	Wheat	nucleus	31.85	43.15
Zm00001d034750_P004	Maize	nucleus	45.33	42.71
Zm00001d017902_P001	Maize	nucleus	6.74	36.67
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	9.19	36.59
TraesCS6D01G249500.1	Wheat	plastid	39.82	35.14
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	40.12	35.12
TraesCS5D01G508500.3	Wheat	nucleus	39.66	33.81
TraesCS5B01G508600.1	Wheat	nucleus	39.51	33.46
TraesCS4A01G364900.3	Wheat	nucleus	39.66	33.46
GSMUA_Achr1P26600_001	Banana	extracellular	10.72	33.02

Protein Annotations

MapMan:17.1.1.9.3	GO:A0A078E3F5	InterPro:ARM-type_fold	EnsemblPlants:CDX95901	ProteinID:CDX95901	ProteinID:CDX95901.1
InterPro:CPL_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00101900001	InterPro:IPR001313	InterPro:IPR033133	PFAM:PF08144	PFscan:PS50302	PFscan:PS50303
PANTHER:PTHR13389	InterPro:PUM-HD	InterPro:Pumilio_RNA-bd_rpt	SMART:SM00025	SUPFAM:SSF48371	UniParc:UPI0004EF09E2
SEG:seg	:	:	:	:	:

Description

BnaC05g36520D

Coordinates

chrLK031891:+:1291607..1295412

Molecular Weight (calculated)

72982.2 Da

IEP (calculated)

9.396

GRAVY (calculated)

-0.481

Length

653 amino acids

Sequence
(BLAST)

001: MSSKGLKSTK RKDNESSEKP DALKSKKPKL SPSNPTDKKH NPTIQNQKPV GGQHGKPKAF GNNDKSVTLS KKERRVQAKE LTEARKKRRK PHYTLEQELA
101: TLWEKMRRRD IGKEDRLKLI SEALQKMKGK MHEIAGSHVS SRVLQTCLKY CSQDEKEVVF KELHPHFLSL ASNTYAVHVL QKMLDGASKQ QLSSCISSLR
201: GHVASLLRHM VGSVVVDHAY HLGNAAQKQE LLGELYSTEL QLFKDLNSTS EKRVVDIIAK LGLQKGSVIR HMTAIVQPIL EKGIVDHNIT HKLLIEYMTV
301: ADKTSAAFVI QQLSGPLLIR MVHTRDGSRL AMLCVKHGSA KERKKLIKAM KTEKESHVGS IASDQYGSMV LACIFSIVDD TKLVTKIIVR ELEANLKDLV
401: MGKNGRRPLL QLLHPNSSRY FSRDDLASLD LSVPSLCLMD KSETLSETKD SDGKESAEEE KDEQEDTVTE QSGLEENVTI AGSKKDPLLR RQELLVKSGL
501: AERLIDVCVE NAEEFLKSNF AKEVMYEVAV GGCDGILLPT LSENLRELYQ AIASVAAEPK PEESEKSSQH ILEDFHSSRT IRRLVLDSPT FASILFKKAL
601: SGKCRSWAQG HCSRILSAFL ETQDVQVREM AKEELQVLVD EGALKITGTK KPE

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.