Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92099 | Canola | nucleus | 73.17 | 72.94 |
| Bra022180.1-P | Field mustard | nucleus | 73.17 | 72.94 |
| CDX95901 | Canola | nucleus | 73.32 | 71.98 |
| CDX94564 | Canola | nucleus | 22.31 | 71.86 |
| CDY04809 | Canola | nucleus | 22.15 | 71.36 |
| Bra036641.1-P | Field mustard | nucleus | 12.79 | 69.49 |
| CDY34785 | Canola | extracellular | 13.57 | 63.97 |
| VIT_05s0077g01770.t01 | Wine grape | plastid | 60.22 | 58.31 |
| Solyc01g065580.2.1 | Tomato | nucleus | 55.23 | 57.1 |
| PGSC0003DMT400003012 | Potato | nucleus | 54.91 | 56.77 |
| KRH50793 | Soybean | endoplasmic reticulum | 55.23 | 55.84 |
| KRH02300 | Soybean | nucleus | 54.76 | 55.1 |
| Os03t0831100-01 | Rice | nucleus | 48.21 | 46.89 |
| TraesCS5D01G508700.1 | Wheat | nucleus | 47.11 | 46.18 |
| TraesCS4A01G364800.1 | Wheat | nucleus | 47.11 | 46.18 |
| TraesCS5B01G508700.1 | Wheat | cytosol | 47.11 | 46.04 |
| GSMUA_Achr1P26590_001 | Banana | nucleus | 40.41 | 45.36 |
| EER90567 | Sorghum | cytosol | 46.02 | 45.25 |
| GSMUA_Achr1P26570_001 | Banana | nucleus | 47.89 | 45.21 |
| TraesCS4B01G020400.1 | Wheat | nucleus | 33.54 | 44.61 |
| HORVU5Hr1G116320.7 | Barley | cytosol, nucleus | 46.18 | 44.11 |
| HORVU5Hr1G070120.8 | Barley | cytosol, nucleus, plasma membrane | 46.96 | 44.07 |
| KRH65810 | Soybean | nucleus | 8.42 | 43.9 |
| Zm00001d034750_P004 | Maize | nucleus | 46.33 | 42.86 |
| KRG88602 | Soybean | nucleus | 7.96 | 41.46 |
| HORVU5Hr1G115980.56 | Barley | endoplasmic reticulum | 32.61 | 41.22 |
| Zm00001d017902_P001 | Maize | nucleus | 7.18 | 38.33 |
| HORVU5Hr1G116000.1 | Barley | cytosol, plastid, vacuole | 8.89 | 34.76 |
| TraesCS6D01G249500.1 | Wheat | plastid | 40.09 | 34.73 |
| TraesCS5D01G508600.2 | Wheat | cytosol, nucleus, plasma membrane | 40.25 | 34.58 |
| TraesCS5D01G508500.3 | Wheat | nucleus | 40.09 | 33.55 |
| TraesCS5B01G508600.1 | Wheat | nucleus | 39.94 | 33.2 |
| GSMUA_Achr1P26600_001 | Banana | extracellular | 10.92 | 33.02 |
| TraesCS4A01G364900.3 | Wheat | nucleus | 39.63 | 32.82 |
Protein Annotations
| MapMan:17.1.1.9.3 | EntrezGene:820934 | UniProt:A0A178VDC1 | ProteinID:AEE75869.1 | Symbol:APUM24 | InterPro:ARM-type_fold |
| ArrayExpress:AT3G16810 | EnsemblPlantsGene:AT3G16810 | RefSeq:AT3G16810 | TAIR:AT3G16810 | RefSeq:AT3G16810-TAIR-G | EnsemblPlants:AT3G16810.1 |
| TAIR:AT3G16810.1 | EMBL:AY045638 | Unigene:At.5720 | ProteinID:BAA95774.1 | InterPro:CPL_dom | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006412 | GO:GO:0006417 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009790 | GO:GO:0009791 |
| GO:GO:0009793 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR001313 | InterPro:IPR033133 | RefSeq:NP_566559.1 |
| ProteinID:OAP03661.1 | PFAM:PF08144 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50302 | PFscan:PS50303 | PANTHER:PTHR13389 | InterPro:PUM-HD |
| InterPro:Pumilio_RNA-bd_rpt | UniProt:Q9LRZ3 | SMART:SM00025 | SUPFAM:SSF48371 | UniParc:UPI00000AB5EC | SEG:seg |
Description
APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
Coordinates
chr3:-:5723222..5727664
Molecular Weight (calculated)
71607.7 Da
IEP (calculated)
9.645
GRAVY (calculated)
-0.433
Length
641 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.