Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G364800.1 | Wheat | nucleus | 98.17 | 98.17 |
| TraesCS5B01G508700.1 | Wheat | cytosol | 97.4 | 97.1 |
| HORVU5Hr1G070120.8 | Barley | cytosol, nucleus, plasma membrane | 94.95 | 90.92 |
| HORVU5Hr1G116320.7 | Barley | cytosol, nucleus | 92.66 | 90.31 |
| Os03t0831100-01 | Rice | nucleus | 74.62 | 74.05 |
| EER90567 | Sorghum | cytosol | 68.04 | 68.25 |
| TraesCS5D01G508600.2 | Wheat | cytosol, nucleus, plasma membrane | 75.23 | 65.95 |
| Zm00001d034750_P004 | Maize | nucleus | 67.74 | 63.92 |
| TraesCS5D01G508500.3 | Wheat | nucleus | 74.01 | 63.19 |
| TraesCS6D01G249500.1 | Wheat | plastid | 67.13 | 59.32 |
| KRH02300 | Soybean | nucleus | 51.83 | 53.22 |
| KRH50793 | Soybean | endoplasmic reticulum | 51.07 | 52.68 |
| GSMUA_Achr1P26570_001 | Banana | nucleus | 53.82 | 51.84 |
| VIT_05s0077g01770.t01 | Wine grape | plastid | 52.14 | 51.51 |
| Solyc01g065580.2.1 | Tomato | nucleus | 47.71 | 50.32 |
| PGSC0003DMT400003012 | Potato | nucleus | 47.25 | 49.84 |
| GSMUA_Achr1P26590_001 | Banana | nucleus | 43.43 | 49.74 |
| CDX92099 | Canola | nucleus | 47.09 | 47.9 |
| Bra022180.1-P | Field mustard | nucleus | 46.79 | 47.59 |
| Zm00001d017902_P001 | Maize | nucleus | 8.72 | 47.5 |
| AT3G16810.1 | Thale cress | nucleus | 46.18 | 47.11 |
| CDX95901 | Canola | nucleus | 46.33 | 46.4 |
| Bra036641.1-P | Field mustard | nucleus | 8.1 | 44.92 |
| CDY04809 | Canola | nucleus | 13.61 | 44.72 |
| KRH65810 | Soybean | nucleus | 8.26 | 43.9 |
| CDX94564 | Canola | nucleus | 13.3 | 43.72 |
| KRG88602 | Soybean | nucleus | 7.95 | 42.28 |
| CDY34785 | Canola | extracellular | 8.56 | 41.18 |
| GSMUA_Achr1P26600_001 | Banana | extracellular | 11.93 | 36.79 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G508700.1 | EnsemblPlantsGene:TraesCS5D01G508700 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:ARM-like | InterPro:ARM-type_fold | InterPro:CPL_dom | InterPro:IPR001313 | InterPro:IPR011989 |
| InterPro:IPR033133 | InterPro:PUM-HD | InterPro:Pumilio_RNA-bd_rpt | PANTHER:PTHR13389 | PFAM:PF08144 | PFscan:PS50302 |
| PFscan:PS50303 | SEG:seg | SMART:SM00025 | SUPFAM:SSF48371 | MapMan:17.1.1.9.3 | : |
Description
No Description!
Coordinates
chr5D:-:533863908..533868956
Molecular Weight (calculated)
72399.4 Da
IEP (calculated)
10.011
GRAVY (calculated)
-0.311
Length
654 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGDHPGA NKRKREAAGR PKAPSKGAGP GDAAKRKKTY DAPAAKPKPQ PVTAKDKRVA AKEMSESRKM KRKPNYNLEK ELAVLWEKMR CRDVSKENRS
101: KLVTEALRKM DGKYFEIAGS HVTARVLQTC VKWCSQPERD AVFVALQPHL LHLSRKKYAV FLVKKLIKLA TKKQLALFIS SLHGHVASLL RHTIGAAVVD
201: CAFHQATPPQ KRSLLLELYS TELQLFKDLT EQKSCSLLET ISKLGLQKSS VLQYMTTVIQ PLLEKGIVEY SIVHTVILEY LTIADKTSAS DVIRQLIPHL
301: TQGSSVVDGD ELSGVAEVPT KSKAKKKRSS EPLLIRIMQT REGLKIGLAC LKHGSAKDRK KIIKSLKGQN MKLALGDYGC LFLACLLSIV DDTKLVTKVV
401: IDELTKQLKE LIFDKNGRRP LLQLLHPLCS RYLTPTDLIC LKYSVPSLVS KDEASESATK VNLDSKLDDV ADKEPGGSED TLVASDSKKD PFKRRQELLV
501: KSELFEVLIE TCIENVGELL RTNFGKDVLY EVAVGGKNNV LEGVTDRIHV LHNAIASDAE RPRTEDVEHA FDNYHSSRVI RKMILDCPAF AATLWKKALK
601: GKCKSFADGF SSKVVAAYLE SSDSKVKDLA KSEVQPLIDG GILKIPDHKA AEKK
101: KLVTEALRKM DGKYFEIAGS HVTARVLQTC VKWCSQPERD AVFVALQPHL LHLSRKKYAV FLVKKLIKLA TKKQLALFIS SLHGHVASLL RHTIGAAVVD
201: CAFHQATPPQ KRSLLLELYS TELQLFKDLT EQKSCSLLET ISKLGLQKSS VLQYMTTVIQ PLLEKGIVEY SIVHTVILEY LTIADKTSAS DVIRQLIPHL
301: TQGSSVVDGD ELSGVAEVPT KSKAKKKRSS EPLLIRIMQT REGLKIGLAC LKHGSAKDRK KIIKSLKGQN MKLALGDYGC LFLACLLSIV DDTKLVTKVV
401: IDELTKQLKE LIFDKNGRRP LLQLLHPLCS RYLTPTDLIC LKYSVPSLVS KDEASESATK VNLDSKLDDV ADKEPGGSED TLVASDSKKD PFKRRQELLV
501: KSELFEVLIE TCIENVGELL RTNFGKDVLY EVAVGGKNNV LEGVTDRIHV LHNAIASDAE RPRTEDVEHA FDNYHSSRVI RKMILDCPAF AATLWKKALK
601: GKCKSFADGF SSKVVAAYLE SSDSKVKDLA KSEVQPLIDG GILKIPDHKA AEKK
001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E
Arabidopsis Description
APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.