Factsheet for Solyc01g065580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003012	Potato	nucleus	94.35	94.35
VIT_05s0077g01770.t01	Wine grape	plastid	66.45	62.24
KRH50793	Soybean	endoplasmic reticulum	62.42	61.04
KRH02300	Soybean	nucleus	61.45	59.81
AT3G16810.1	Thale cress	nucleus	57.1	55.23
Bra022180.1-P	Field mustard	nucleus	57.26	55.21
CDX92099	Canola	nucleus	57.26	55.21
CDX95901	Canola	nucleus	57.42	54.52
CDY04809	Canola	nucleus	16.61	51.76
CDX94564	Canola	nucleus	16.45	51.26
KRH65810	Soybean	nucleus	9.52	47.97
KRG88602	Soybean	nucleus	9.52	47.97
TraesCS5D01G508700.1	Wheat	nucleus	50.32	47.71
TraesCS4A01G364800.1	Wheat	nucleus	50.16	47.55
Os03t0831100-01	Rice	nucleus	50.48	47.5
GSMUA_Achr1P26570_001	Banana	nucleus	51.94	47.42
TraesCS5B01G508700.1	Wheat	cytosol	50.16	47.41
TraesCS4B01G020400.1	Wheat	nucleus	36.13	46.47
GSMUA_Achr1P26590_001	Banana	nucleus	42.26	45.88
Bra036641.1-P	Field mustard	nucleus	8.71	45.76
EER90567	Sorghum	cytosol	48.06	45.71
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	48.87	45.16
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	49.68	45.1
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	35.16	43.0
Zm00001d034750_P004	Maize	nucleus	47.9	42.86
CDY34785	Canola	extracellular	9.35	42.65
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	43.71	36.33
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	9.52	35.98
TraesCS5D01G508500.3	Wheat	nucleus	43.71	35.38
TraesCS4A01G364900.3	Wheat	nucleus	43.71	35.01
GSMUA_Achr1P26600_001	Banana	extracellular	11.94	34.91
TraesCS5B01G508600.1	Wheat	nucleus	42.9	34.5
TraesCS6D01G249500.1	Wheat	plastid	41.13	34.46
Zm00001d017902_P001	Maize	nucleus	6.61	34.17

Protein Annotations

Gene3D:1.25.10.10	MapMan:17.1.1.9.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:CPL_dom	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006412	GO:GO:0006417
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0019538	InterPro:IPR001313	InterPro:IPR011989	InterPro:IPR033133
UniProt:K4AWG2	PFAM:PF00806	PFAM:PF08144	PFscan:PS50302	PFscan:PS50303	PANTHER:PTHR13389
InterPro:PUM-HD	InterPro:Pumilio_RNA-bd_rpt	SMART:SM00025	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc01g065580.2	EnsemblPlants:Solyc01g065580.2.1
UniParc:UPI000276273C	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:71934548..71939629

Molecular Weight (calculated)

68739.8 Da

IEP (calculated)

10.099

GRAVY (calculated)

-0.356

Length

620 amino acids

Sequence
(BLAST)

001: MAAKPDDSKK RKHVPAAGGK SAPKKLKSST DKVLKKPHKL TKQLGDKKQQ PKPHVPVESK RERRIQAKEL AEARKKKRKK HYTLEQELAS LWEKMRTRNI
101: AKEERSRLVS DALKKMKGKI PEIASSHVSS RVLQTCVKHC TQDERNAVFV EIRPHFITLA TNTYAVHLVT KMLDNASKEQ QAQFISTLHG HVATLLRHMV
201: GSLVVEHAYQ LGNAAQKQTL LMELYSPELQ LFKDLISAKE ARLVDVISNL QLQKGSVVRH MTSVLQPIME KGILDHSIIH RALVEYLTIA DQTSAAEIIQ
301: QLSSPDLVRM IHTKDGSKIG IFCIKHGSAK ERKKIIKGMK DKVGKVARDK CGALVLVSIL SIVDDTKLLS KVIIRELEGI LKELLSDQNG RRPLLQLLHP
401: NSSRHFSPDE LAALGSSVPS LVTKSPLEVN DAETSVLGEA GKEDADITKS SHVNEGGKKD PFTRRQELLV HSGLAEKLID ACCEMAEELL RSNFGKDVIY
501: EVAMGGADSI LSPTLDGKLE TLHGVIASLA AHPKKEGSDE QHLFEHFHSS RTIRKLILDS PSFACTLYEK ALKGKCSIWA QGHSAKVISA LLETSSSMVH
601: KLVEKETQPL VDDGILKLAK

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.