CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94564	Canola	nucleus	95.98	95.98
CDY34785	Canola	extracellular	42.21	61.76
HORVU5Hr1G116000.1	Barley	cytosol, plastid, vacuole	26.13	31.71
GSMUA_Achr1P26600_001	Banana	extracellular	31.66	29.72
CDX92099	Canola	nucleus	85.93	26.59
CDX95901	Canola	nucleus	86.43	26.34
AT3G16810.1	Thale cress	nucleus	71.36	22.15
VIT_05s0077g01770.t01	Wine grape	plastid	57.29	17.22
PGSC0003DMT400003012	Potato	nucleus	52.26	16.77
Solyc01g065580.2.1	Tomato	nucleus	51.76	16.61
HORVU5Hr1G115980.56	Barley	endoplasmic reticulum	41.21	16.17
Os03t0831100-01	Rice	nucleus	52.76	15.93
KRH50793	Soybean	endoplasmic reticulum	50.25	15.77
KRH02300	Soybean	nucleus	50.25	15.7
EER90567	Sorghum	cytosol	44.72	13.65
TraesCS5D01G508700.1	Wheat	nucleus	44.72	13.61
TraesCS4A01G364800.1	Wheat	nucleus	44.72	13.61
TraesCS5B01G508700.1	Wheat	cytosol	44.72	13.57
Zm00001d034750_P004	Maize	nucleus	47.24	13.56
GSMUA_Achr1P26570_001	Banana	nucleus	45.73	13.4
HORVU5Hr1G070120.8	Barley	cytosol, nucleus, plasma membrane	44.22	12.88
HORVU5Hr1G116320.7	Barley	cytosol, nucleus	42.71	12.67
TraesCS5D01G508600.2	Wheat	cytosol, nucleus, plasma membrane	42.71	11.39
TraesCS5D01G508500.3	Wheat	nucleus	42.71	11.1
TraesCS5B01G508600.1	Wheat	nucleus	42.71	11.02
TraesCS4B01G020400.1	Wheat	nucleus	26.63	11.0
TraesCS4A01G364900.3	Wheat	nucleus	42.21	10.85
TraesCS6D01G249500.1	Wheat	plastid	40.2	10.81
GSMUA_Achr1P26590_001	Banana	nucleus	19.6	6.83
KRH65810	Soybean	nucleus	0.0	0.0
KRG88602	Soybean	nucleus	0.0	0.0
Zm00001d017902_P001	Maize	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY04809	EnsemblPlantsGene:GSBRNA2T00119508001	PANTHER:PTHR13389	ProteinID:CDY04809	ProteinID:CDY04809.1	SEG:seg
UniParc:UPI0004EDD819	MapMan:17.1.1.9.3	:	:	:	:

Description

BnaC05g17800D

Coordinates

chrLK031957:+:985290..986610

Molecular Weight (calculated)

22181.2 Da

IEP (calculated)

4.665

GRAVY (calculated)

-0.495

Length

199 amino acids

Sequence
(BLAST)

001: MEKNGRRPLL QLLHPNSSRY FSRDDLASLD LSVPSLCLMD KSETKDSDGK ESAEEEKDEQ EDIELLVKSG LAEVAVGGCD GILLLTLSEN LRELYQAIAS
101: AAAEPKPEES EKSSQHILED FHSSRTIRRL VLDSPTFASI LFKKALSGKC RSWAQGHCSR ILYAFLETQD DQVREMAKEE LQVLVDEGAL KITGTKKPE

Best Arabidopsis Sequence Match ( AT3G16810.1 )
(BLAST)

001: MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR
101: RNIGKEDRSK LISEAIRKMK GKVPEIAVSH VSSRVLQTCV KFCSQAEKDV LFTELQPQFL NLASNKYAVH FIQKMLDGAS KQQLAACISS LRGHVAPLLR
201: HVFGSLVVEH AYHLGSAAQK QELLAELYST ELQLFKGLTT SNEKTVVDII AKLGLQKGAV NRHMTAIIQP ILEKGIVDHT ITHKLLIEYL TIADKTSAAD
301: VLQLLTGSLL LRMVHTRDGS RLAMLSIKHG SAKERKKIIK AMKEHVKKMA FDQFGSMVLA CIFSIVDDTK LVTKIIVREL EATLKDLVMD KNGRRPLLQL
401: LHPNSSRYLS HDDLAALDLS VPSLCSMDKS ETSSKTKDTD GNEIGEETKD EQEDTVAEHS DHEENVTAMG GKKDPLVRRQ ELLVNSGLAE RLIDVCVENA
501: EEFLQSKFGN EVMYEVAIGG SDGILCPSLS EKLCELYEAI SSVAAEPKPQ ESEKDSEHIL ENFHSSRTIR RLVLNRPGFA SILFKKALSG KCRSWAQGHC
601: SKILSAFVET EDVQVREMAK TELQVLVNEG TLKISATKKP E

Arabidopsis Description

APUM24Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.