Factsheet for TraesCS1A01G357200.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41670.1	TraesCS4A01G206200.2	AT1G35670.1	19130088
AT5G41670.1	TraesCS4B01G109800.2	AT1G35670.1	19130088
AT5G41670.1	TraesCS4D01G107200.1	AT1G35670.1	19130088
AT5G41670.1	TraesCS5A01G107900.1	AT1G35670.1	19130088
AT5G41670.1	TraesCS5B01G115400.1	AT1G35670.1	19130088
AT5G41670.1	TraesCS5D01G122800.1	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G373600.1	Wheat	plastid	99.6	99.6
TraesCS1D01G361400.1	Wheat	cytosol, mitochondrion, plastid	93.81	98.33
EES08484	Sorghum	plastid	91.42	90.87
Os11t0484500-01	Rice	plastid	90.22	88.98
Zm00001d049187_P001	Maize	plastid	89.02	87.97
HORVU1Hr1G080480.1	Barley	plastid	97.41	83.42
GSMUA_Achr3P16150_001	Banana	mitochondrion	71.26	75.96
GSMUA_Achr2P06120_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.68	75.7
AT1G64190.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	73.45	75.56
Bra027685.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	73.05	75.15
CDY39725	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	72.85	74.95
CDY25568	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.85	74.95
CDY44457	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	72.85	74.95
VIT_02s0025g00900.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	73.85	74.9
Bra025480.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	72.65	74.74
AT5G41670.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.65	74.74
KRH60004	Soybean	cytosol	71.46	74.74
KRH41276	Soybean	nucleus	73.65	74.55
Solyc12g056120.1.1	Tomato	plastid	72.85	73.59
PGSC0003DMT400093802	Potato	cytosol	72.26	73.13
CDY34405	Canola	cytosol	20.56	72.54
TraesCS7A01G012000.1	Wheat	mitochondrion	66.07	69.1
CDY34406	Canola	extracellular	15.57	66.1
TraesCS4A01G455900.1	Wheat	endoplasmic reticulum	66.07	65.67
TraesCS7A01G033600.1	Wheat	peroxisome	17.76	49.17

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	Gene3D:3.40.50.720	MapMan:3.9.1.3
InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2	GO:GO:0003674
GO:GO:0003824	GO:GO:0004616	GO:GO:0006098	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009409	GO:GO:0009414	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719
GO:GO:0009737	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:IPR013328	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00393	PFAM:PF03446	PIRSF:PIRSF000109	PRINTS:PR00076	PANTHER:PTHR11811	PANTHER:PTHR11811:SF33
InterPro:Pgluconate_DH	SMART:SM01350	SUPFAM:SSF48179	SUPFAM:SSF51735	TIGRFAMs:TIGR00873	EnsemblPlantsGene:TraesCS1A01G357200
EnsemblPlants:TraesCS1A01G357200.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:539900305..539901810

Molecular Weight (calculated)

53877.3 Da

IEP (calculated)

5.594

GRAVY (calculated)

-0.149

Length

501 amino acids

Sequence
(BLAST)

001: MTSPAPAPPA AAAAQSPPPR IGLAGLATMG QNLALNIAEK GFPISVYNRT AAKVDSTLSR AAAEGALPVL GHRDPRDFVL SLARPRTVVL LVQAGPAVDA
101: TIDALSPYLD AGDAIVDGGN EWYQNTERRI EQAASRGILY LGMGVSGGEE GARNGPSLMP GGDFQAYSNI KDILEKAAAQ TEDGPCVTFV GPGGAGNFVK
201: MVHNGIEYGD MQLIAEAYDV LHRVGGLSNS EIADVFAEWN KGELESFLVE ITADIFTVAD PLEGSTGGAL VDKILDKTGM KGTGKWTVQQ AAELAVAAPT
301: IAASLDGRYL SGLKDERVAA ASVLEEEGMP VGLLEKINVD KKVLVDRVRQ ALYSSKVCSY AQGMNLLRAK SVEQGWNLNL AELSRIWKGG CIIRARFLDR
401: IKKAYDRNPE LANLIVDREF AREMVQRQGA WRWVVARAVE AGISTPGMSA SLSYFDTYRC NRLPANLIQA QRDLFGAHTY ERIDRPGSFH TEWSKLAREG
501: K

Best Arabidopsis Sequence Match ( AT1G64190.1 )
(BLAST)

001: MESAALSRIG LAGLAVMGQN LALNIAEKGF PISVYNRTTS KVDETLDRAA VEGNLPVSGQ YSPRDFVLSI QRPRSLIILV KAGAPVDQTI DAFSEYMEPG
101: DCIIDGGNEW YQNTERRISE AEQKGLLYLG MGVSGGEEGA RNGPSLMPGG SFQAYDNIKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNEEL AEIFTEWNSG ELESFLVEIT SDIFRVKDEF GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLR EAGLKEEIGS ASSGIDKKRL VDDVRQALYA SKICSYAQGM NLLRAKSLEK SWNLNFGELA RIWKGGCIIR AVFLDRIKKA YQRNPDLASL
401: VVDPEFAKEM VQRQAAWRRV VGLAVSAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKNH

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SH69]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.