Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1B01G373600.1 | Wheat | plastid | 98.33 | 93.81 |
TraesCS1A01G357200.1 | Wheat | unclear | 98.33 | 93.81 |
EES08484 | Sorghum | plastid | 91.42 | 86.71 |
Os11t0484500-01 | Rice | plastid | 91.63 | 86.22 |
Zm00001d049187_P001 | Maize | plastid | 90.17 | 85.01 |
HORVU1Hr1G080480.1 | Barley | plastid | 96.23 | 78.63 |
KRH60004 | Soybean | cytosol | 75.31 | 75.16 |
AT1G64190.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 75.52 | 74.13 |
GSMUA_Achr3P16150_001 | Banana | mitochondrion | 72.59 | 73.83 |
Bra027685.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 75.1 | 73.72 |
CDY25568 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 74.9 | 73.51 |
VIT_02s0025g00900.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 75.94 | 73.48 |
GSMUA_Achr2P06120_001 | Banana | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 60.67 | 73.42 |
KRH41276 | Soybean | nucleus | 75.94 | 73.33 |
AT5G41670.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 74.69 | 73.31 |
CDY44457 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 74.69 | 73.31 |
CDY39725 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 74.69 | 73.31 |
Bra025480.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 74.48 | 73.1 |
CDY34405 | Canola | cytosol | 21.55 | 72.54 |
Solyc12g056120.1.1 | Tomato | plastid | 74.27 | 71.57 |
PGSC0003DMT400093802 | Potato | cytosol | 73.64 | 71.11 |
TraesCS7D01G030000.1 | Wheat | mitochondrion, peroxisome | 67.57 | 67.43 |
TraesCS3D01G491400.1 | Wheat | peroxisome | 67.36 | 65.05 |
CDY34406 | Canola | extracellular | 14.64 | 59.32 |
Protein Annotations
KEGG:00030+1.1.1.44 | KEGG:00480+1.1.1.44 | Gene3D:1.10.1040.10 | Gene3D:1.20.5.320 | Gene3D:3.40.50.720 | MapMan:3.9.1.3 |
InterPro:6-PGluconate_DH-like_C_sf | InterPro:6PGDH_C | InterPro:6PGDH_Gnd/GntZ | InterPro:6PGDH_NADP-bd | InterPro:6PGD_dom2 | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0004616 | GO:GO:0006098 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009409 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 |
GO:GO:0009737 | GO:GO:0009987 | GO:GO:0016491 | GO:GO:0055114 | InterPro:IPR013328 | InterPro:NAD(P)-bd_dom_sf |
PFAM:PF00393 | PFAM:PF03446 | PIRSF:PIRSF000109 | PRINTS:PR00076 | PANTHER:PTHR11811 | PANTHER:PTHR11811:SF33 |
InterPro:Pgluconate_DH | SMART:SM01350 | SUPFAM:SSF48179 | SUPFAM:SSF51735 | TIGRFAMs:TIGR00873 | EnsemblPlantsGene:TraesCS1D01G361400 |
EnsemblPlants:TraesCS1D01G361400.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:444150824..444152412
Molecular Weight (calculated)
51804.8 Da
IEP (calculated)
5.258
GRAVY (calculated)
-0.133
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQNLALNIA EKGFPISVYN RTAAKVDSTL SRAAAEGALP VLGHRDPRDF VLSLARPRTV VLLVQAGPAV DATIDALSPY LDAGDAIVDG GNEWYQNTER
101: RIEQAASRGI LYLGMGVSGG EEGARNGPSL MPGGDFQAYS NIKDILEKAA AQTEDGPCVT FVGPGGAGNF VKMVHNGIEY GDMQLIAEAY DVLHRVGGLS
201: NSEIADVFAE WNKGELESFL VEITADIFTV ADPLEGSTGG ALVDKILDKT GMKGTGKWTV QQAAELAVAA PTIAASLDGR YLSGLKDERV AAASVLEEEG
301: MPVGLLEKIN VDKKVLVDRV RQALYSSKVC SYAQGMNLLR AKSVEQGWNL NLAELSRIWK GGCIIRARFL DRIKKAYDRN PELANLIVDR EFAREMVQRQ
401: GAWRWVVARA VEAGISTPGM SASLSYFDTY RCNRLPANLI QAQRDLFGAH TYERIDRPGS FHTEWTKLAR EVSCAVCT
101: RIEQAASRGI LYLGMGVSGG EEGARNGPSL MPGGDFQAYS NIKDILEKAA AQTEDGPCVT FVGPGGAGNF VKMVHNGIEY GDMQLIAEAY DVLHRVGGLS
201: NSEIADVFAE WNKGELESFL VEITADIFTV ADPLEGSTGG ALVDKILDKT GMKGTGKWTV QQAAELAVAA PTIAASLDGR YLSGLKDERV AAASVLEEEG
301: MPVGLLEKIN VDKKVLVDRV RQALYSSKVC SYAQGMNLLR AKSVEQGWNL NLAELSRIWK GGCIIRARFL DRIKKAYDRN PELANLIVDR EFAREMVQRQ
401: GAWRWVVARA VEAGISTPGM SASLSYFDTY RCNRLPANLI QAQRDLFGAH TYERIDRPGS FHTEWTKLAR EVSCAVCT
001: MESAALSRIG LAGLAVMGQN LALNIAEKGF PISVYNRTTS KVDETLDRAA VEGNLPVSGQ YSPRDFVLSI QRPRSLIILV KAGAPVDQTI DAFSEYMEPG
101: DCIIDGGNEW YQNTERRISE AEQKGLLYLG MGVSGGEEGA RNGPSLMPGG SFQAYDNIKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNEEL AEIFTEWNSG ELESFLVEIT SDIFRVKDEF GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLR EAGLKEEIGS ASSGIDKKRL VDDVRQALYA SKICSYAQGM NLLRAKSLEK SWNLNFGELA RIWKGGCIIR AVFLDRIKKA YQRNPDLASL
401: VVDPEFAKEM VQRQAAWRRV VGLAVSAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKNH
101: DCIIDGGNEW YQNTERRISE AEQKGLLYLG MGVSGGEEGA RNGPSLMPGG SFQAYDNIKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNEEL AEIFTEWNSG ELESFLVEIT SDIFRVKDEF GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLR EAGLKEEIGS ASSGIDKKRL VDDVRQALYA SKICSYAQGM NLLRAKSLEK SWNLNFGELA RIWKGGCIIR AVFLDRIKKA YQRNPDLASL
401: VVDPEFAKEM VQRQAAWRRV VGLAVSAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKNH
Arabidopsis Description
6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SH69]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.