Factsheet for Os11t0484500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 21433289
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41670.1	Os11t0171500-01	AT1G35670.1	19130088
AT5G41670.1	Os12t0169800-00	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08484	Sorghum	plastid	91.73	92.46
Zm00001d049187_P001	Maize	plastid	92.13	92.31
TraesCS1D01G361400.1	Wheat	cytosol, mitochondrion, plastid	86.22	91.63
TraesCS1B01G373600.1	Wheat	plastid	88.98	90.22
TraesCS1A01G357200.1	Wheat	unclear	88.98	90.22
GSMUA_Achr2P06120_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	60.24	77.47
GSMUA_Achr3P16150_001	Banana	mitochondrion	71.26	77.02
HORVU1Hr1G080480.1	Barley	plastid	88.58	76.92
KRH41276	Soybean	nucleus	74.02	75.96
KRH60004	Soybean	cytosol	71.46	75.78
Bra027685.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.64	75.77
CDY39725	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	72.44	75.56
CDY44457	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	72.44	75.56
AT1G64190.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.44	75.56
CDY25568	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.44	75.56
AT5G41670.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.44	75.56
VIT_02s0025g00900.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	73.43	75.51
Bra025480.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	72.24	75.36
CDY34405	Canola	cytosol	20.87	74.65
Solyc12g056120.1.1	Tomato	plastid	72.64	74.4
PGSC0003DMT400093802	Potato	cytosol	72.44	74.34
Os06t0111500-01	Rice	extracellular, plasma membrane, plastid	66.54	70.42
CDY34406	Canola	extracellular	14.96	64.41

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	Gene3D:3.40.50.720	MapMan:3.9.1.3
EntrezGene:4350528	InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2
ProteinID:ABA93694.1	EMBL:AK071592	EMBL:AY278362	ProteinID:BAF28275.1	ProteinID:BAT14060.1	ProteinID:BAT14061.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004616	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006098	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009414	GO:GO:0009507
GO:GO:0009536	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987
GO:GO:0016491	GO:GO:0019521	GO:GO:0050661	GO:GO:0055114	InterPro:IPR013328	InterPro:NAD(P)-bd_dom_sf
EnsemblPlantsGene:Os11g0484500	EnsemblPlants:Os11t0484500-01	PFAM:PF00393	PFAM:PF03446	PIRSF:PIRSF000109	PRINTS:PR00076
PANTHER:PTHR11811	PANTHER:PTHR11811:SF33	InterPro:Pgluconate_DH	UniProt:Q2R480	SMART:SM01350	SUPFAM:SSF48179
SUPFAM:SSF51735	TIGRFAMs:TIGR00873	UniParc:UPI000068228A	RefSeq:XP_015616899.1	SEG:seg	:

Description

6-phosphogluconate dehydrogenase 2, plastidic 6PGDHSimilar to 6-phosphogluconate dehydrogenase. (Os11t0484500-01);Similar to 6-phosphogluconate dehydrogenase, decarboxylating. (Os11t0484500-02)

Coordinates

chr11:+:17064395..17066284

Molecular Weight (calculated)

54302.9 Da

IEP (calculated)

6.397

GRAVY (calculated)

-0.109

Length

508 amino acids

Sequence
(BLAST)

001: MASPAPAPPA ASSSAAGSAP PPRIGLAGLA TMGQNLALNI AEKGFPISVY NRTAAKVDAT VSRAEAEGAL PVLGHRDPRG FVLSLSRPRT VVLLVQAGRA
101: VDATIDALVP YLDAGDAIVD GGNEWYQNTE RRIEEAAARG ILYLGMGVSG GEEGARNGPS LMPGGHIDAY NNIRDILEKA AAQTEDGACV TFVGPGGAGN
201: FVKMVHNGIE YGDMQLIAEA YDVLRRVGGL SNSEIADVFA EWNRGELESF LVEITADIFT VADPLDGSGG GGLVDKILDK TGMKGTGKWT VQQAAELAIA
301: APTIAASLDG RYLSGLKDER VAAAGVLEAE GMPSGLLETI NVDKKMLVDR VRQALYASKI CSYAQGMNLL RAKSVEKGWN LNLAELARIW KGGCIIRAKF
401: LDRIKKAYDR NPELANLIVD REFAREMVQR QNAWRWVVAR AVEAGISTPG MSASLSYFDT YRCSRLPANL IQAQRDLFGA HTYERIDRPG SFHTEWTKLA
501: RKSNGAAI

Best Arabidopsis Sequence Match ( AT5G41670.2 )
(BLAST)

001: MESVALSRIG LAGLAVMGQN LALNIADKGF PISVYNRTTS KVDETLDRAS NEGKLPVAGQ YSPRDFVLSI QRPRSVIILV KAGAPVDQTI SALSEYMEPG
101: DCIIDGGNEW YQNTERRIVE AEKKGLLYLG MGVSGGEEGA RNGPSLMPGG SFTAYNNVKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNDEL AEIFTEWNRG ELESFLVEIT SDIFRVKDDY GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLE EAGLKEDIGS ASRGVDKKRL IDDVRQALYA SKICSYAQGM NLLRAKSLEK GWDLNLGEMA RIWKGGCIIR AVFLDRIKKA YQRNPNLASL
401: VVDPDFAKEM VQRQAAWRRV VGLAISAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKSQ

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178UQL8]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.