Factsheet for Solyc12g056120.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 2
peroxisome 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	mitochondrion
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 20363867
plastid: 22908117
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41670.1	Solyc06g065380.2.1	AT1G35670.1	19130088
AT5G41670.1	Solyc11g018610.1.1	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400093802	Potato	cytosol	97.58	97.78
AT5G41670.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	84.27	85.83
CDY44457	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	83.87	85.42
AT1G64190.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	83.87	85.42
Bra027685.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	83.67	85.22
CDY39725	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	83.67	85.22
Bra025480.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	83.47	85.01
CDY25568	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	83.47	85.01
CDY34406	Canola	extracellular	19.96	83.9
VIT_02s0025g00900.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	83.27	83.6
KRH41276	Soybean	nucleus	82.86	83.03
KRH60004	Soybean	cytosol	79.64	82.46
CDY34405	Canola	cytosol	22.58	78.87
GSMUA_Achr2P06120_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.5	78.48
Solyc05g010260.2.1	Tomato	cytosol	42.54	77.86
GSMUA_Achr3P16150_001	Banana	mitochondrion	73.39	77.45
Solyc04g005160.1.1	Tomato	extracellular, plastid	71.77	75.58
TraesCS1D01G361400.1	Wheat	cytosol, mitochondrion, plastid	71.57	74.27
TraesCS1A01G357200.1	Wheat	unclear	73.59	72.85
TraesCS1B01G373600.1	Wheat	plastid	73.59	72.85
Os11t0484500-01	Rice	plastid	74.4	72.64
EES08484	Sorghum	plastid	73.59	72.42
Zm00001d049187_P001	Maize	plastid	73.99	72.39
HORVU1Hr1G080480.1	Barley	plastid	73.59	62.39
Solyc12g040580.1.1	Tomato	cytosol	17.34	62.32
Solyc12g040570.1.1	Tomato	extracellular, mitochondrion, plastid	26.61	61.4

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	Gene3D:3.40.50.720	MapMan:3.9.1.3
InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004616	GO:GO:0005488	GO:GO:0005975	GO:GO:0006098
GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009414
GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0016491
GO:GO:0019521	GO:GO:0050661	GO:GO:0055114	InterPro:IPR013328	UniProt:K4DFU3	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00393	PFAM:PF03446	PIRSF:PIRSF000109	PRINTS:PR00076	PANTHER:PTHR11811	PANTHER:PTHR11811:SF33
InterPro:Pgluconate_DH	SMART:SM01350	SUPFAM:SSF48179	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc12g056120.1	EnsemblPlants:Solyc12g056120.1.1
TIGRFAMs:TIGR00873	UniParc:UPI0001CB1CFA	:	:	:	:

Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:K4DFU3]

Coordinates

chr12:+:62087151..62088641

Molecular Weight (calculated)

54424.9 Da

IEP (calculated)

5.465

GRAVY (calculated)

-0.311

Length

496 amino acids

Sequence
(BLAST)

001: MEGAATAQAL SRIGLAGLAV MGQNLALNIA EKGFPISVYN RTTSKVDETL DRAQNEGQLP LIGQYNPRDF VLSIQRPRSV IILVKAGSPV DQTIAALSEY
101: MEPGDTIIDG GNEWYENTER RIDEASSKGL LYLGMGVSGG EEGARNGPSL MPGGSYGAYT NIKDILEKVA AQVEDGPCVT YIGEGGSGNF VKMVHNGIEY
201: GDMQLISEAY DVLKNAGGLS NSELADIFAE WNRGELESFL IEITADIFNV KDELTGNGEL VDKILDKTGM KGTGKWTVQQ AAELSIAAPT IAASLDSRYM
301: SGLKDERVEA SEIFRKEGLK EEISSDINGI SSVDKKRLID DVRQALYASK ICSYAQGMNL LRAKSSEKGW NLNLGEMARI WKGGCIIRAV FLDRIKKAYQ
401: RNPNLANLMV DTEFAREMVQ RQAAWRRVVG LAVQKGISVP GMSASLQYFD TYRRSRLPAN LVQAQRDYFG AHTYERVDKP GAYHTEWAKL ARKARV

Best Arabidopsis Sequence Match ( AT5G41670.2 )
(BLAST)

001: MESVALSRIG LAGLAVMGQN LALNIADKGF PISVYNRTTS KVDETLDRAS NEGKLPVAGQ YSPRDFVLSI QRPRSVIILV KAGAPVDQTI SALSEYMEPG
101: DCIIDGGNEW YQNTERRIVE AEKKGLLYLG MGVSGGEEGA RNGPSLMPGG SFTAYNNVKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNDEL AEIFTEWNRG ELESFLVEIT SDIFRVKDDY GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLE EAGLKEDIGS ASRGVDKKRL IDDVRQALYA SKICSYAQGM NLLRAKSLEK GWDLNLGEMA RIWKGGCIIR AVFLDRIKKA YQRNPNLASL
401: VVDPDFAKEM VQRQAAWRRV VGLAISAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKSQ

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178UQL8]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.