Factsheet for Solyc12g040570.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g010260.2.1	Tomato	cytosol	71.63	56.83
VIT_02s0012g03060.t01	Wine grape	cytosol	16.74	51.43
GSMUA_Achr5P03620_001	Banana	mitochondrion, peroxisome, plastid	73.95	34.27
Solyc04g005160.1.1	Tomato	extracellular, plastid	74.88	34.18
KRH01445	Soybean	nucleus	73.95	32.72
KRH45161	Soybean	endoplasmic reticulum	73.49	32.51
Os06t0111500-01	Rice	extracellular, plasma membrane, plastid	71.16	31.88
OQU75707	Sorghum	mitochondrion	70.7	31.6
TraesCS7D01G030000.1	Wheat	mitochondrion, peroxisome	69.77	31.32
TraesCS7A01G012000.1	Wheat	mitochondrion	69.77	31.32
TraesCS3B01G565200.1	Wheat	golgi	69.77	31.32
Zm00001d042184_P001	Maize	plastid	69.77	31.25
TraesCS3D01G491400.1	Wheat	peroxisome	70.23	30.51
HORVU7Hr1G006160.4	Barley	peroxisome	70.23	30.51
Zm00001d035925_P001	Maize	cytosol, mitochondrion	71.16	30.48
TraesCS4A01G455900.1	Wheat	endoplasmic reticulum	69.77	29.76
KRG93756	Soybean	plastid	72.56	29.05
CDX77261	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	20.0	27.92
Solyc12g056120.1.1	Tomato	plastid	61.4	26.61
KXG34080	Sorghum	peroxisome	16.74	13.64
TraesCS7A01G033600.1	Wheat	peroxisome	2.79	3.31
Solyc12g040580.1.1	Tomato	cytosol	0.0	0.0
HORVU7Hr1G006190.1	Barley	cytosol, extracellular, golgi	0.0	0.0
GSMUA_Achr2P18030_001	Banana	cytosol	0.0	0.0

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:3.40.50.720	MapMan:50.1.1	InterPro:6PGDH_NADP-bd	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004616	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0050661	GO:GO:0055114	UniProt:K4DEV1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF03446	PRINTS:PR00076
PANTHER:PTHR11811	PANTHER:PTHR11811:SF33	InterPro:Pgluconate_DH	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc12g040570.1	EnsemblPlants:Solyc12g040570.1.1
UniParc:UPI000276A7E9	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:43415013..43416442

Molecular Weight (calculated)

23482.7 Da

IEP (calculated)

5.108

GRAVY (calculated)

-0.053

Length

215 amino acids

Sequence
(BLAST)

001: MVITGRSMVI PIRLLGDVDR CCMMLDCWSL TRCCTTNMAT PTRIGLAGLA VMGQNRALNI AEKGFPTSVY NRSTSKVDET VERAKKEGNL PLYGFHDPES
101: FVLSIQKPRV IVILVKAGLP VDQTIKTLSA FMEKGDCIID GGNEWYENTE RREKEMAELG LLYLGMGVSG GEEGARNGPS MMPGGSFEAY KYIEDILLKV
201: AAQVPDSGPC VTYIG

Best Arabidopsis Sequence Match ( AT3G02360.2 )
(BLAST)

001: MAVQPTRIGL AGLAVMGQNL ALNIAEKGFP ISVYNRTTSK VDETVERAKK EGNLPLYGFH DPESFVKSIQ KPRVIIMLVK AGSPVDQTIK TLSAYLEKGD
101: CIVDGGNEWY ENTERREKAV AENGFLYLGM GVSGGEEGAR NGPSMMPGGS YEAYKNIEDI VLKVAAQVRD SGPCVTYIGK GGSGNFVKMV HNGIEYGDMQ
201: LIAEAYDVLK SVGKLSNEEL HSVFSDWNKG ELESFLVEIT ADIFGIKDDK GDGHLVDKVL DKTGMKGTGK WTVQQAAELS VPAPTIESSL DARFLSGLKD
301: ERVQAAKVFK AGGFGDILTD QKVDKKQLVD DVRKALYASK ICSYAQGMNL IRAKSIEKGW GLKLGELARI WKGGCIIRAI FLDRIKQAYD RNAELANLLV
401: DPEFAKEIIE RQSAWRRVVC LAINSGISTP GMSASLAYFD SYRRERLPAN LVQAQRDYFG AHTYERTDVE GSFHTEWFKI ARQSKI

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178VK18]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.