Factsheet for Os06t0111500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular

Predictor Summary:

mitochondrion 2
cytosol 2
peroxisome 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	mitochondrion
EpiLoc:	cytosol
MultiLoc:	peroxisome
Predotar:	mitochondrion
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 17189339
plasma membrane: 18260611
extracellular: 18372294
extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75707	Sorghum	mitochondrion	95.62	95.43
Zm00001d042184_P001	Maize	plastid	95.0	95.0
TraesCS7A01G012000.1	Wheat	mitochondrion	92.71	92.9
TraesCS7D01G030000.1	Wheat	mitochondrion, peroxisome	92.5	92.69
TraesCS3B01G565200.1	Wheat	golgi	92.5	92.69
HORVU7Hr1G006160.4	Barley	peroxisome	92.71	89.9
TraesCS3D01G491400.1	Wheat	peroxisome	92.71	89.9
Zm00001d035925_P001	Maize	cytosol, mitochondrion	93.96	89.84
TraesCS4A01G455900.1	Wheat	endoplasmic reticulum	92.71	88.29
KXG34080	Sorghum	peroxisome	47.5	86.36
GSMUA_Achr2P18030_001	Banana	cytosol	53.12	85.57
Bra039172.1-P	Field mustard	mitochondrion	86.46	85.04
PGSC0003DMT400064670	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	85.83	84.95
Bra021465.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	85.83	84.77
KRH45161	Soybean	endoplasmic reticulum	85.42	84.36
AT3G02360.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	85.42	84.36
KRH01445	Soybean	nucleus	85.21	84.16
PGSC0003DMT400004861	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	85.0	84.12
Bra023725.1-P	Field mustard	cytosol	21.88	77.78
KRG93756	Soybean	plastid	86.46	77.28
VIT_02s0012g03060.t01	Wine grape	cytosol	11.25	77.14
GSMUA_Achr5P03620_001	Banana	mitochondrion, peroxisome, plastid	73.54	76.08
Solyc12g040580.1.1	Tomato	cytosol	21.67	75.36
Solyc12g040570.1.1	Tomato	extracellular, mitochondrion, plastid	31.88	71.16
Os11t0484500-01	Rice	plastid	70.42	66.54
TraesCS7A01G033600.1	Wheat	peroxisome	24.38	64.64
HORVU7Hr1G006190.1	Barley	cytosol, extracellular, golgi	3.75	56.25
CDX77261	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	13.12	40.91

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	Gene3D:3.40.50.720	MapMan:3.9.1.3
EntrezGene:4339892	InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2
EMBL:AF486280	EMBL:AK065920	ProteinID:BAA93024.1	ProteinID:BAF18500.1	ProteinID:BAS95792.1	ProteinID:BAS95793.1
ProteinID:EAZ35578.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004616	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006098
GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009414
GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0016491
GO:GO:0019521	GO:GO:0050661	GO:GO:0055114	InterPro:IPR013328	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os06g0111500
EnsemblPlants:Os06t0111500-01	PFAM:PF00393	PFAM:PF03446	PIRSF:PIRSF000109	PRINTS:PR00076	PANTHER:PTHR11811
PANTHER:PTHR11811:SF33	InterPro:Pgluconate_DH	UniProt:Q9LI00	SMART:SM01350	SUPFAM:SSF48179	SUPFAM:SSF51735
TIGRFAMs:TIGR00873	UniParc:UPI00000A8D88	RefSeq:XP_015642949.1	RefSeq:XP_015642950.1	:	:

Description

6-phosphogluconate dehydrogenase 1, cytosolic 6PGDHCytosolic 6-phosphogluconate dehydrogenase. (Os06t0111500-01);Similar to 6-phosphogluconate dehydrogenase, decarboxylating. (Os06t0111500-02)

Coordinates

chr6:+:643712..646718

Molecular Weight (calculated)

52724.2 Da

IEP (calculated)

6.038

GRAVY (calculated)

-0.179

Length

480 amino acids

Sequence
(BLAST)

001: MAVTRIGLAG LAVMGQNLAL NIAEKGFPIS VYNRTTSKVD ETVQRAKVEG NLPVYGFHDP ASFVNSIQKP RVVIMLVKAG APVDQTIATL AAHLEQGDCI
101: IDGGNEWYEN TERREKAMEE RGLLYLGMGV SGGEEGARNG PSLMPGGSFE AYKYIEDILL KVAAQVPDSG PCVTYIGKGG SGNFVKMVHN GIEYGDMQLI
201: SEAYDVLKSV GKLTNSELQQ VFSEWNKGEL LSFLIEITAD IFSIKDDQGS GHLVDKVLDK TGMKGTGKWT VQQAAELSVA APTIEASLDS RFLSGLKDER
301: VEAAKVFQGD FSSNLPVDKA QLIEDVRQAL YASKICSYAQ GMNIIKAKSM EKGWSLNLGE LARIWKGGCI IRAIFLDRIK KAYDRNSDLA NLLVDPEFAQ
401: EIMDRQAAWR RVVCLAINNG VSTPGMSASL AYFDSYRRDR LPANLVQAQR DYFGAHTYER VDMPGSFHTE WFKIARAAKM

Best Arabidopsis Sequence Match ( AT3G02360.2 )
(BLAST)

001: MAVQPTRIGL AGLAVMGQNL ALNIAEKGFP ISVYNRTTSK VDETVERAKK EGNLPLYGFH DPESFVKSIQ KPRVIIMLVK AGSPVDQTIK TLSAYLEKGD
101: CIVDGGNEWY ENTERREKAV AENGFLYLGM GVSGGEEGAR NGPSMMPGGS YEAYKNIEDI VLKVAAQVRD SGPCVTYIGK GGSGNFVKMV HNGIEYGDMQ
201: LIAEAYDVLK SVGKLSNEEL HSVFSDWNKG ELESFLVEIT ADIFGIKDDK GDGHLVDKVL DKTGMKGTGK WTVQQAAELS VPAPTIESSL DARFLSGLKD
301: ERVQAAKVFK AGGFGDILTD QKVDKKQLVD DVRKALYASK ICSYAQGMNL IRAKSIEKGW GLKLGELARI WKGGCIIRAI FLDRIKQAYD RNAELANLLV
401: DPEFAKEIIE RQSAWRRVVC LAINSGISTP GMSASLAYFD SYRRERLPAN LVQAQRDYFG AHTYERTDVE GSFHTEWFKI ARQSKI

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178VK18]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.