Factsheet for PGSC0003DMT400064670

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, plasma membrane, golgi

Predictor Summary:

mitochondrion 2
cytosol 1
peroxisome 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, peroxisome, plastid, secretory
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	mitochondrion
EpiLoc:	cytosol
MultiLoc:	peroxisome
PProwler:	peroxisome
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004861	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	93.2	93.2
AT3G02360.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	89.48	89.3
CDY34724	Canola	mitochondrion	74.23	89.11
CDY43238	Canola	mitochondrion	74.02	89.08
CDY57527	Canola	mitochondrion	74.02	88.86
KRH45161	Soybean	endoplasmic reticulum	88.45	88.27
Bra039172.1-P	Field mustard	mitochondrion	88.66	88.11
KRH01445	Soybean	nucleus	88.04	87.86
Bra021465.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	87.84	87.65
VIT_01s0010g01130.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.31	87.6
GSMUA_Achr2P18030_001	Banana	cytosol	52.78	85.91
Os06t0111500-01	Rice	extracellular, plasma membrane, plastid	84.95	85.83
Zm00001d042184_P001	Maize	plastid	84.74	85.62
OQU75707	Sorghum	mitochondrion	83.71	84.41
TraesCS3B01G565200.1	Wheat	golgi	82.27	83.3
TraesCS7D01G030000.1	Wheat	mitochondrion, peroxisome	82.06	83.09
TraesCS7A01G012000.1	Wheat	mitochondrion	82.06	83.09
Bra023725.1-P	Field mustard	cytosol	22.47	80.74
Zm00001d035925_P001	Maize	cytosol, mitochondrion	83.51	80.68
HORVU7Hr1G006160.4	Barley	peroxisome	82.06	80.4
TraesCS3D01G491400.1	Wheat	peroxisome	82.06	80.4
KXG34080	Sorghum	peroxisome	43.09	79.17
KRG93756	Soybean	plastid	87.63	79.14
TraesCS4A01G455900.1	Wheat	endoplasmic reticulum	82.06	78.97
GSMUA_Achr5P03620_001	Banana	mitochondrion, peroxisome, plastid	71.75	75.0
PGSC0003DMT400093802	Potato	cytosol	74.43	72.93
TraesCS7A01G033600.1	Wheat	peroxisome	21.03	56.35
HORVU7Hr1G006190.1	Barley	cytosol, extracellular, golgi	3.51	53.12
VIT_16s0013g01670.t01	Wine grape	extracellular	14.64	52.99
HORVU7Hr1G006450.1	Barley	cytosol	5.36	45.61
HORVU7Hr1G006070.1	Barley	cytosol	7.42	43.37

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	EntrezGene:102597739	Gene3D:3.40.50.720
MapMan:3.9.1.3	InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004616	GO:GO:0005488	GO:GO:0005975
GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0019521	GO:GO:0050661	GO:GO:0055114	InterPro:IPR013328	UniProt:M1CCQ2	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00393	PFAM:PF03446	EnsemblPlantsGene:PGSC0003DMG400025121	PGSC:PGSC0003DMG400025121	EnsemblPlants:PGSC0003DMT400064670	PIRSF:PIRSF000109
PRINTS:PR00076	PANTHER:PTHR11811	PANTHER:PTHR11811:SF33	InterPro:Pgluconate_DH	SMART:SM01350	SUPFAM:SSF48179
SUPFAM:SSF51735	TIGRFAMs:TIGR00873	UniParc:UPI000295F43D	RefSeq:XP_006348606.1	:	:

Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:PGSC_GENE;Acc:PGSC0003DMG400025121]

Coordinates

chr5:-:1437168..1441274

Molecular Weight (calculated)

53476.0 Da

IEP (calculated)

6.292

GRAVY (calculated)

-0.244

Length

485 amino acids

Sequence
(BLAST)

001: MATPTRIGLA GLAVMGQNLA LNIAEKGFPI SVYNRTTSKV DETVERAKKE GNLPLYGFHD PESFVLSIQK PRVIIILVKA GAPVDQTIKT LSSYMEKGDC
101: IIDGGNEWYE NTERREKEMA ELGLRYLGMG VSGGEEGARN GPSLMPGGSF EAYKYIEDIL LKVAAQVPDS GPCVTYIGKG GSGNFVKMVH NGIEYGDMQL
201: IAEAYDVLKS VGKLSNDELH QAFSEWNNGE LQSFLIEITA DIFGIKDDKA DGHLVDKVLD KTGMKGTGKW TVQQAAELSI AAPTIASSLD SRFLSGLKDE
301: RVQAAKVFKS CGVSDILVEQ SVDKKQLIDD VRKALYASKI CSYAQGMNLI RAKSAEKGWD LTLGELARIW KGGCIIRAIF LDRIKQAYDR NADLANLLVD
401: EEFAKEVVER QSAWRRVVCL AITSGISTPG MSSSLAYFDS YRRERLPANL VQAQRDYFGA HTYERTDMPG SFHTEWFKIA KQSKI

Best Arabidopsis Sequence Match ( AT3G02360.2 )
(BLAST)

001: MAVQPTRIGL AGLAVMGQNL ALNIAEKGFP ISVYNRTTSK VDETVERAKK EGNLPLYGFH DPESFVKSIQ KPRVIIMLVK AGSPVDQTIK TLSAYLEKGD
101: CIVDGGNEWY ENTERREKAV AENGFLYLGM GVSGGEEGAR NGPSMMPGGS YEAYKNIEDI VLKVAAQVRD SGPCVTYIGK GGSGNFVKMV HNGIEYGDMQ
201: LIAEAYDVLK SVGKLSNEEL HSVFSDWNKG ELESFLVEIT ADIFGIKDDK GDGHLVDKVL DKTGMKGTGK WTVQQAAELS VPAPTIESSL DARFLSGLKD
301: ERVQAAKVFK AGGFGDILTD QKVDKKQLVD DVRKALYASK ICSYAQGMNL IRAKSIEKGW GLKLGELARI WKGGCIIRAI FLDRIKQAYD RNAELANLLV
401: DPEFAKEIIE RQSAWRRVVC LAINSGISTP GMSASLAYFD SYRRERLPAN LVQAQRDYFG AHTYERTDVE GSFHTEWFKI ARQSKI

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178VK18]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.