Factsheet for VIT_01s0010g01130.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
peroxisome 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	secretory
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	peroxisome
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064670	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	87.6	90.31
Solyc04g005160.1.1	Tomato	extracellular, plastid	84.6	89.81
AT3G02360.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	86.6	89.09
PGSC0003DMT400004861	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	86.4	89.07
CDY43238	Canola	mitochondrion	71.6	88.83
CDY34724	Canola	mitochondrion	71.6	88.61
Bra039172.1-P	Field mustard	mitochondrion	86.4	88.52
CDY57527	Canola	mitochondrion	71.4	88.37
Bra021465.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	85.4	87.86
Bra023725.1-P	Field mustard	cytosol	21.4	79.26
VIT_02s0012g03060.t01	Wine grape	cytosol	11.0	78.57
VIT_02s0025g00900.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	73.6	74.49
VIT_16s0013g01670.t01	Wine grape	extracellular	14.8	55.22

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	EntrezGene:100246134	wikigene:100246134
Gene3D:3.40.50.720	MapMan:3.9.1.3	InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd
InterPro:6PGD_dom2	ProteinID:CCB51175	ProteinID:CCB51175.1	UniProt:F6HGH4	EMBL:FN595754	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004616	GO:GO:0005488	GO:GO:0005975	GO:GO:0006098
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019521
GO:GO:0050661	GO:GO:0055114	InterPro:IPR013328	EntrezGene:LOC100246134	wikigene:LOC100246134	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00393	PFAM:PF03446	PIRSF:PIRSF000109	PRINTS:PR00076	PANTHER:PTHR11811	PANTHER:PTHR11811:SF33
InterPro:Pgluconate_DH	SMART:SM01350	SUPFAM:SSF48179	SUPFAM:SSF51735	TIGR:TC64829	TIGRFAMs:TIGR00873
UniParc:UPI00021092DC	ArrayExpress:VIT_01s0010g01130	EnsemblPlantsGene:VIT_01s0010g01130	EnsemblPlants:VIT_01s0010g01130.t01	unigene:Vvi.1411	RefSeq:XP_002270984
RefSeq:XP_002270984.1	RefSeq:XP_002271021	RefSeq:XP_002271021.1	:	:	:

Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:F6HGH4]

Coordinates

chr1:-:16739777..16743243

Molecular Weight (calculated)

55288.3 Da

IEP (calculated)

7.027

GRAVY (calculated)

-0.197

Length

500 amino acids

Sequence
(BLAST)

001: MRAVSSSWVW FVEKVMAPVS RIGLSGLAVM GQNLALNIAE KGFPISVYNR TTSKVDETVE RAKQEGNLPL YGFHDPESFV NSIQKPRVII MLVKAGAPVD
101: QTIKTLSGYL EKGDCIIDGG NEWYENTERR EKAMAELGLL YLGMGVSGGE EGARHGPSLM PGGSFEAYKY IEDILLKVAA QVPDSGPCVT YIGKGGSGNF
201: VKMVHNGIEY GDMQLIAEAY DVLKSVGKLS NEELRNVFSE WNKGELLSFL IEITADIFSI KDDKGDGFLV DKVLDKTGMK GTGKWTVQQA ADLSVAAPTI
301: ASSLDARFLS GLKEERVEAA KVFKSSGFEN VLSDQTVDKK KLIDDVRQAL YASKICSYAQ GMNLIRAKSI EKGWDLKLGE LARIWKGGCI IRAIFLDRIK
401: KAYDRNADLA NLLVDPEFAK EIVERQSAWR RVVCLAINSG ISTPGMSSSL AYFDSYRRDR LPANLVQAQR DYFGAHTYER IDTTGSFHTE WFKIAQQSKI

Best Arabidopsis Sequence Match ( AT3G02360.2 )
(BLAST)

001: MAVQPTRIGL AGLAVMGQNL ALNIAEKGFP ISVYNRTTSK VDETVERAKK EGNLPLYGFH DPESFVKSIQ KPRVIIMLVK AGSPVDQTIK TLSAYLEKGD
101: CIVDGGNEWY ENTERREKAV AENGFLYLGM GVSGGEEGAR NGPSMMPGGS YEAYKNIEDI VLKVAAQVRD SGPCVTYIGK GGSGNFVKMV HNGIEYGDMQ
201: LIAEAYDVLK SVGKLSNEEL HSVFSDWNKG ELESFLVEIT ADIFGIKDDK GDGHLVDKVL DKTGMKGTGK WTVQQAAELS VPAPTIESSL DARFLSGLKD
301: ERVQAAKVFK AGGFGDILTD QKVDKKQLVD DVRKALYASK ICSYAQGMNL IRAKSIEKGW GLKLGELARI WKGGCIIRAI FLDRIKQAYD RNAELANLLV
401: DPEFAKEIIE RQSAWRRVVC LAINSGISTP GMSASLAYFD SYRRERLPAN LVQAQRDYFG AHTYERTDVE GSFHTEWFKI ARQSKI

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178VK18]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.