CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, secretory
BaCelLo:	mitochondrion
iPSORT:	secretory
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34724	Canola	mitochondrion	98.51	98.27
CDY57527	Canola	mitochondrion	98.51	98.27
Bra023725.1-P	Field mustard	cytosol	28.78	85.93
AT3G02360.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	95.29	79.01
PGSC0003DMT400064670	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	89.08	74.02
PGSC0003DMT400004861	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	86.6	71.96
Solyc04g005160.1.1	Tomato	extracellular, plastid	83.87	71.76
VIT_01s0010g01130.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.83	71.6
CDY34406	Canola	extracellular	20.35	69.49
CDY34405	Canola	cytosol	23.33	66.2
CDY25568	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	75.19	62.22
CDY44457	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	75.19	62.22
CDY39725	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	74.94	62.01
VIT_16s0013g01670.t01	Wine grape	extracellular	17.62	52.99
CDX77261	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	15.14	39.61

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	Gene3D:3.40.50.720	MapMan:3.9.1.3
InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2	GO:A0A078I290	UniProt:A0A078I290
EnsemblPlants:CDY43238	ProteinID:CDY43238	ProteinID:CDY43238.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004616	GO:GO:0005488	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0050661	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00076266001	InterPro:IPR013328
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00393	PFAM:PF03446	PRINTS:PR00076	PANTHER:PTHR11811	PANTHER:PTHR11811:SF33
InterPro:Pgluconate_DH	SMART:SM01350	SUPFAM:SSF48179	SUPFAM:SSF51735	UniPathway:UPA00115	UniParc:UPI0004EE4849

Description

BnaC05g48310DBnaC05g48310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I290]

Coordinates

chrLK032550:-:38040..40115

Molecular Weight (calculated)

44452.9 Da

IEP (calculated)

5.552

GRAVY (calculated)

-0.321

Length

403 amino acids

Sequence
(BLAST)

001: MAVQPTRIGL AGLAVMGQNL ALNIASKGFP ISVYNRTTSK VDETVERAKK EGNLPVYGFH DPESFVNSIQ KPRVIIMLVK AGAPVDQTIK TLSAYLEKGD
101: CIVDGGNEWY ENTERREKAV SENGFLYLGM GVSGGEEGAR NGPSLMPGGS FDAYKNIEDI LLKVAAQVRD SGPCVTYIGK GGSGNFVKMV HNGIEYGDMQ
201: LIAEAYDVLK SVGKLSNEEL HGVFTEWNKG ELESFLVEIT ADIFAIKDDK GDGHLVDKVL DKTGMKGTGK WTVQQAAELS VPSPTIESSL DARFLSGLKD
301: ERVQAAKVFK EGELARIWKG GCIIRAIFLD RIKQAYDRNA ELANLLVDPD LAYFDSYRRE RLPANLVQAQ RDYFGAHTYE RTDVEGSFHT EWFKIARQSK
401: SNM

Best Arabidopsis Sequence Match ( AT3G02360.1 )
(BLAST)

001: MAVQPTRIGL AGLAVMGQNL ALNIAEKGFP ISVYNRTTSK VDETVERAKK EGNLPLYGFH DPESFVKSIQ KPRVIIMLVK AGSPVDQTIK TLSAYLEKGD
101: CIVDGGNEWY ENTERREKAV AENGFLYLGM GVSGGEEGAR NGPSMMPGGS YEAYKNIEDI VLKVAAQVRD SGPCVTYIGK GGSGNFVKMV HNGIEYGDMQ
201: LIAEAYDVLK SVGKLSNEEL HSVFSDWNKG ELESFLVEIT ADIFGIKDDK GDGHLVDKVL DKTGMKGTGK WTVQQAAELS VPAPTIESSL DARFLSGLKD
301: ERVQAAKVFK AGGFGDILTD QKVDKKQLVD DVRKALYASK ICSYAQGMNL IRAKSIEKGW GLKLGELARI WKGGCIIRAI FLDRIKQAYD RNAELANLLV
401: DPEFAKEIIE RQSAWRRVVC LAINSGISTP GMSASLAYFD SYRRERLPAN LVQAQRDYFG AHTYERTDVE GSFHTEWFKI ARQSKI

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178VK18]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.