CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34406	Canola	extracellular	33.77	44.07
Solyc12g040570.1.1	Tomato	extracellular, mitochondrion, plastid	27.92	20.0
CDY43238	Canola	mitochondrion	39.61	15.14
CDY34724	Canola	mitochondrion	39.61	15.1
CDY57527	Canola	mitochondrion	39.61	15.1
GSMUA_Achr5P03620_001	Banana	mitochondrion, peroxisome, plastid	42.86	14.22
CDY25568	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	44.16	13.96
CDY44457	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	43.51	13.76
CDY39725	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	42.86	13.55
Zm00001d042184_P001	Maize	plastid	41.56	13.33
TraesCS7D01G030000.1	Wheat	mitochondrion, peroxisome	40.91	13.15
TraesCS7A01G012000.1	Wheat	mitochondrion	40.91	13.15
TraesCS3B01G565200.1	Wheat	golgi	40.91	13.15
Os06t0111500-01	Rice	extracellular, plasma membrane, plastid	40.91	13.12
OQU75707	Sorghum	mitochondrion	40.91	13.1
KRH45161	Soybean	endoplasmic reticulum	40.91	12.96
KRH01445	Soybean	nucleus	40.91	12.96
TraesCS3D01G491400.1	Wheat	peroxisome	40.91	12.73
HORVU7Hr1G006160.4	Barley	peroxisome	40.91	12.73
Zm00001d035925_P001	Maize	cytosol, mitochondrion	40.91	12.55
TraesCS4A01G455900.1	Wheat	endoplasmic reticulum	40.91	12.5
KRG93756	Soybean	plastid	40.26	11.55
Solyc12g040580.1.1	Tomato	cytosol	9.74	10.87
CDY34405	Canola	cytosol	7.79	8.45
TraesCS7A01G033600.1	Wheat	peroxisome	7.14	6.08
GSMUA_Achr2P18030_001	Banana	cytosol	11.04	5.7
KXG34080	Sorghum	peroxisome	9.09	5.3
HORVU7Hr1G006190.1	Barley	cytosol, extracellular, golgi	0.0	0.0
VIT_02s0012g03060.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX77261	EnsemblPlantsGene:GSBRNA2T00127962001	Gene3D:3.40.50.720	GO:A0A078CJ98	GO:GO:0003674	GO:GO:0003824
GO:GO:0004616	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	InterPro:6PGDH_NADP-bd	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR11811	PANTHER:PTHR11811:SF33	PFAM:PF03446	ProteinID:CDX77261	ProteinID:CDX77261.1	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0004EF175D	MapMan:35.1	:	:	:

Description

BnaC08g03060D

Coordinates

chrLK031810:+:478299..479558

Molecular Weight (calculated)

16581.9 Da

IEP (calculated)

9.684

GRAVY (calculated)

-0.158

Length

154 amino acids

Sequence
(BLAST)

001: MVSATLSRIS LAGIAAMGQN LALNIAEKGF LISVYNRTTS KVVEILERAT VEGNLPVSEF ISRGRAEDAS ITDKYRAVTS TYYRGAVGGM LVIILIGNKC
101: FYEGSWCGCF WSGQNKIPIA AASKGNCKGG WQNVGNASKK KKDGDDFKKS AERD

Best Arabidopsis Sequence Match ( AT1G64190.1 )
(BLAST)

001: MESAALSRIG LAGLAVMGQN LALNIAEKGF PISVYNRTTS KVDETLDRAA VEGNLPVSGQ YSPRDFVLSI QRPRSLIILV KAGAPVDQTI DAFSEYMEPG
101: DCIIDGGNEW YQNTERRISE AEQKGLLYLG MGVSGGEEGA RNGPSLMPGG SFQAYDNIKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNEEL AEIFTEWNSG ELESFLVEIT SDIFRVKDEF GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLR EAGLKEEIGS ASSGIDKKRL VDDVRQALYA SKICSYAQGM NLLRAKSLEK SWNLNFGELA RIWKGGCIIR AVFLDRIKKA YQRNPDLASL
401: VVDPEFAKEM VQRQAAWRRV VGLAVSAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKNH

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SH69]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.