CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	mitochondrion
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45161	Soybean	endoplasmic reticulum	98.56	98.56
AT3G02360.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	89.09	89.09
Bra039172.1-P	Field mustard	mitochondrion	88.68	88.32
PGSC0003DMT400064670	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	87.86	88.04
GSMUA_Achr2P18030_001	Banana	cytosol	53.91	87.92
PGSC0003DMT400004861	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	87.45	87.63
Bra021465.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	87.45	87.45
Zm00001d042184_P001	Maize	plastid	84.57	85.62
Os06t0111500-01	Rice	extracellular, plasma membrane, plastid	84.16	85.21
OQU75707	Sorghum	mitochondrion	83.54	84.41
TraesCS3B01G565200.1	Wheat	golgi	82.1	83.3
TraesCS7D01G030000.1	Wheat	mitochondrion, peroxisome	81.89	83.09
TraesCS7A01G012000.1	Wheat	mitochondrion	81.89	83.09
KRG93756	Soybean	plastid	91.56	82.87
Zm00001d035925_P001	Maize	cytosol, mitochondrion	83.33	80.68
TraesCS3D01G491400.1	Wheat	peroxisome	81.89	80.4
KXG34080	Sorghum	peroxisome	43.62	80.3
Solyc12g040580.1.1	Tomato	cytosol	22.43	78.99
TraesCS4A01G455900.1	Wheat	endoplasmic reticulum	81.89	78.97
Bra023725.1-P	Field mustard	cytosol	21.81	78.52
GSMUA_Achr5P03620_001	Banana	mitochondrion, peroxisome, plastid	72.43	75.86
VIT_02s0012g03060.t01	Wine grape	cytosol	10.91	75.71
Solyc12g040570.1.1	Tomato	extracellular, mitochondrion, plastid	32.72	73.95
KRH41276	Soybean	nucleus	74.28	72.93
KRH60004	Soybean	cytosol	71.81	72.86
TraesCS7A01G033600.1	Wheat	peroxisome	20.78	55.8
HORVU7Hr1G006070.1	Barley	cytosol	8.02	46.99
CDX77261	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	12.96	40.91

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	Gene3D:3.40.50.720	MapMan:3.9.1.3
EntrezGene:547455	InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2
EMBL:ACUP02011514	EnsemblPlantsGene:GLYMA_18G277300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004616
GO:GO:0005488	GO:GO:0005975	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019521	GO:GO:0050661	GO:GO:0055114	UniProt:I1N4U1
InterPro:IPR013328	EnsemblPlants:KRH01445	ProteinID:KRH01445	ProteinID:KRH01445.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00393
PFAM:PF03446	PIRSF:PIRSF000109	PRINTS:PR00076	PANTHER:PTHR11811	PANTHER:PTHR11811:SF33	InterPro:Pgluconate_DH
SMART:SM01350	SUPFAM:SSF48179	SUPFAM:SSF51735	TIGRFAMs:TIGR00873	UniParc:UPI00023D90A6	SEG:seg

Description

hypothetical protein

Coordinates

chr18:+:55917312..55920484

Molecular Weight (calculated)

53654.4 Da

IEP (calculated)

5.626

GRAVY (calculated)

-0.235

Length

486 amino acids

Sequence
(BLAST)

001: MAQPTTRIGL AGLAVMGQNL ALNIAEKGFP ISVYNRTTSK VDETVERAKQ EGNLPVYGYH DPEAFVHSIQ KPRVIIMLVK AGAPVDQTIK TLSAYMEKGD
101: CIIDGGNEWY ENTERREKEV AELGLLYLGM GVSGGEEGAR NGPSLMPGGS FEAFKYIEDI LLKVAAQVPD SGPCVTYIGK GGSGNFVKMI HNGIEYGDMQ
201: LIAEAYDVLK SVGKLSNEEL QSVFSEWNKG ELLSFLIEIT ADIFGIKDDK GDGYLVDKVL DKTGMKGTGK WTVQQAAELS IAAPTIEASL DARFLSGLKE
301: ERVEAAKVFK SGGIGDIVTD QPVDKQKLID DVRKALYAAK ICSYAQGMNL IRAKSIEKGW DLKLGELARI WKGGCIIRAI FLDRIKQAYE RNPNLANLLV
401: DPEFAKEIID YQSAWRRVVC LAINSGISTP GMSASLAYFD TYRRERLPAN LVQAQRDYFG AHTYERVDIE GSYHTEWFKL AKQSRN

Best Arabidopsis Sequence Match ( AT3G02360.2 )
(BLAST)

001: MAVQPTRIGL AGLAVMGQNL ALNIAEKGFP ISVYNRTTSK VDETVERAKK EGNLPLYGFH DPESFVKSIQ KPRVIIMLVK AGSPVDQTIK TLSAYLEKGD
101: CIVDGGNEWY ENTERREKAV AENGFLYLGM GVSGGEEGAR NGPSMMPGGS YEAYKNIEDI VLKVAAQVRD SGPCVTYIGK GGSGNFVKMV HNGIEYGDMQ
201: LIAEAYDVLK SVGKLSNEEL HSVFSDWNKG ELESFLVEIT ADIFGIKDDK GDGHLVDKVL DKTGMKGTGK WTVQQAAELS VPAPTIESSL DARFLSGLKD
301: ERVQAAKVFK AGGFGDILTD QKVDKKQLVD DVRKALYASK ICSYAQGMNL IRAKSIEKGW GLKLGELARI WKGGCIIRAI FLDRIKQAYD RNAELANLLV
401: DPEFAKEIIE RQSAWRRVVC LAINSGISTP GMSASLAYFD SYRRERLPAN LVQAQRDYFG AHTYERTDVE GSFHTEWFKI ARQSKI

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178VK18]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.