Factsheet for TraesCS3B01G565200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

peroxisome 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, peroxisome, secretory
MultiLoc:	peroxisome
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	peroxisome
YLoc:	mitochondrion

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G012000.1	Wheat	mitochondrion	99.58	99.58
TraesCS7D01G030000.1	Wheat	mitochondrion, peroxisome	99.37	99.37
HORVU7Hr1G006160.4	Barley	peroxisome	99.58	96.36
TraesCS3D01G491400.1	Wheat	peroxisome	99.37	96.16
TraesCS4A01G455900.1	Wheat	endoplasmic reticulum	99.58	94.64
Zm00001d042184_P001	Maize	plastid	93.11	92.92
OQU75707	Sorghum	mitochondrion	93.11	92.72
Os06t0111500-01	Rice	extracellular, plasma membrane, plastid	92.69	92.5
Zm00001d035925_P001	Maize	cytosol, mitochondrion	91.65	87.45
GSMUA_Achr2P18030_001	Banana	cytosol	52.19	83.89
Bra021465.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	84.76	83.54
AT3G02360.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	84.76	83.54
Bra039172.1-P	Field mustard	mitochondrion	84.76	83.2
PGSC0003DMT400004861	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	83.72	82.68
KXG34080	Sorghum	peroxisome	45.51	82.58
KRH45161	Soybean	endoplasmic reticulum	83.51	82.3
PGSC0003DMT400064670	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	83.3	82.27
KRH01445	Soybean	nucleus	83.3	82.1
KRG93756	Soybean	plastid	84.76	75.61
VIT_02s0012g03060.t01	Wine grape	cytosol	10.86	74.29
Bra023725.1-P	Field mustard	cytosol	20.88	74.07
GSMUA_Achr5P03620_001	Banana	mitochondrion, peroxisome, plastid	71.19	73.49
Solyc12g040580.1.1	Tomato	cytosol	20.88	72.46
Solyc12g040570.1.1	Tomato	extracellular, mitochondrion, plastid	31.32	69.77
TraesCS7A01G033600.1	Wheat	peroxisome	25.47	67.4
TraesCS1B01G373600.1	Wheat	plastid	69.31	66.27
CDX77261	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	13.15	40.91

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	Gene3D:3.40.50.720	MapMan:3.9.1.3
InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2	GO:GO:0003674
GO:GO:0003824	GO:GO:0004616	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:IPR013328	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00393
PFAM:PF03446	PIRSF:PIRSF000109	PRINTS:PR00076	PANTHER:PTHR11811	PANTHER:PTHR11811:SF33	InterPro:Pgluconate_DH
SMART:SM01350	SUPFAM:SSF48179	SUPFAM:SSF51735	TIGRFAMs:TIGR00873	EnsemblPlantsGene:TraesCS3B01G565200	EnsemblPlants:TraesCS3B01G565200.1

Description

No Description!

Coordinates

chr3B:-:798164579..798166018

Molecular Weight (calculated)

52542.9 Da

IEP (calculated)

5.576

GRAVY (calculated)

-0.203

Length

479 amino acids

Sequence
(BLAST)

001: MALTRIGLAG LAVMGQNLAL NIAEKGFPIS VYNRTTSKVD ETVQRAKLEG NLPLYGFHDP ASFVNSIQKP RVVIMLVKAG APVDQTIATL AAHLEQGDCI
101: VDGGNEWYEN TERREKAMEE RGLLYLGMGV SGGEEGARHG PSMMPGGSLE AYQYIEDILL KVSAQVPDSG PCVTYIGKGG SGNFVKMVHN GIEYGDMQLI
201: AEAYDVLKSV GKLTNGELQQ VFAEWNKGEL LSFLVEITAD IFSIKDDQGE GYLVDKVLDK TGMKGTGKWT VQQAAELSVA APTIEASLDS RFLSGLKDER
301: VAASKIFQGD YSSGETVDKA QLIEDVRKAL YASKICSYAQ GMNIIKAKSV EKGWGLNLGE LARIWKGGCI IRASFLDRIK KAYDRNGELA NLLIDPEFAQ
401: EIMDRQAAWR RVVCLAINNG VSTPGMSASL AYFDSYRRER LPANLVQAQR DYFGAHTYER VDMPGSFHTE WYKIANSKI

Best Arabidopsis Sequence Match ( AT3G02360.2 )
(BLAST)

001: MAVQPTRIGL AGLAVMGQNL ALNIAEKGFP ISVYNRTTSK VDETVERAKK EGNLPLYGFH DPESFVKSIQ KPRVIIMLVK AGSPVDQTIK TLSAYLEKGD
101: CIVDGGNEWY ENTERREKAV AENGFLYLGM GVSGGEEGAR NGPSMMPGGS YEAYKNIEDI VLKVAAQVRD SGPCVTYIGK GGSGNFVKMV HNGIEYGDMQ
201: LIAEAYDVLK SVGKLSNEEL HSVFSDWNKG ELESFLVEIT ADIFGIKDDK GDGHLVDKVL DKTGMKGTGK WTVQQAAELS VPAPTIESSL DARFLSGLKD
301: ERVQAAKVFK AGGFGDILTD QKVDKKQLVD DVRKALYASK ICSYAQGMNL IRAKSIEKGW GLKLGELARI WKGGCIIRAI FLDRIKQAYD RNAELANLLV
401: DPEFAKEIIE RQSAWRRVVC LAINSGISTP GMSASLAYFD SYRRERLPAN LVQAQRDYFG AHTYERTDVE GSFHTEWFKI ARQSKI

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178VK18]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.