CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

mitochondrion 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	mitochondrion
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01445	Soybean	nucleus	98.56	98.56
AT3G02360.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	90.12	90.12
Bra039172.1-P	Field mustard	mitochondrion	89.09	88.73
GSMUA_Achr2P18030_001	Banana	cytosol	54.32	88.59
PGSC0003DMT400064670	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	88.27	88.45
Bra021465.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	87.86	87.86
PGSC0003DMT400004861	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	87.24	87.42
Zm00001d042184_P001	Maize	plastid	84.98	86.04
Os06t0111500-01	Rice	extracellular, plasma membrane, plastid	84.36	85.42
OQU75707	Sorghum	mitochondrion	83.74	84.62
TraesCS3B01G565200.1	Wheat	golgi	82.3	83.51
TraesCS7D01G030000.1	Wheat	mitochondrion, peroxisome	82.1	83.3
TraesCS7A01G012000.1	Wheat	mitochondrion	82.1	83.3
KRG93756	Soybean	plastid	91.98	83.24
Zm00001d035925_P001	Maize	cytosol, mitochondrion	83.74	81.08
KXG34080	Sorghum	peroxisome	44.03	81.06
TraesCS3D01G491400.1	Wheat	peroxisome	82.1	80.61
TraesCS4A01G455900.1	Wheat	endoplasmic reticulum	82.1	79.17
Solyc12g040580.1.1	Tomato	cytosol	22.43	78.99
Bra023725.1-P	Field mustard	cytosol	21.81	78.52
GSMUA_Achr5P03620_001	Banana	mitochondrion, peroxisome, plastid	72.63	76.08
VIT_02s0012g03060.t01	Wine grape	cytosol	10.91	75.71
Solyc12g040570.1.1	Tomato	extracellular, mitochondrion, plastid	32.51	73.49
KRH41276	Soybean	nucleus	74.49	73.13
KRH60004	Soybean	cytosol	72.02	73.07
TraesCS7A01G033600.1	Wheat	peroxisome	20.99	56.35
HORVU7Hr1G006070.1	Barley	cytosol	8.02	46.99
CDX77261	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	12.96	40.91

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	EntrezGene:100796103	Gene3D:3.40.50.720
MapMan:3.9.1.3	InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2
EMBL:ACUP02004998	EnsemblPlantsGene:GLYMA_08G254500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004616
GO:GO:0005488	GO:GO:0005975	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019521	GO:GO:0050661	GO:GO:0055114	UniProt:I1KWM7
InterPro:IPR013328	EnsemblPlants:KRH45161	ProteinID:KRH45161	ProteinID:KRH45161.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00393
PFAM:PF03446	PIRSF:PIRSF000109	PRINTS:PR00076	PANTHER:PTHR11811	PANTHER:PTHR11811:SF33	InterPro:Pgluconate_DH
SMART:SM01350	SUPFAM:SSF48179	SUPFAM:SSF51735	TIGRFAMs:TIGR00873	UniParc:UPI0002338109	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:22502151..22505322

Molecular Weight (calculated)

53562.4 Da

IEP (calculated)

6.401

GRAVY (calculated)

-0.221

Length

486 amino acids

Sequence
(BLAST)

001: MAQPSTRIGL AGLAVMGQNL ALNIAEKGFP ISVYNRTTSK VDETVERAKQ EGNLPVYGYH DPEAFVHSIQ KPRVIIMLVK AGAPVDQTIK TLSAYMEKGD
101: CIIDGGNEWY ENTERREKSV AELGLLYLGM GVSGGEEGAR NGPSLMPGGS FEAFKYIEDI LLKVAAQVPD SGPCVTYIGK GGSGNFVKMI HNGIEYGDMQ
201: LIAEAYDVLK SVGKLSNEEL QSVFSEWNKG ELLSFLIEIT ADIFGIKDDK GDGYLVDKVL DKTGMKGTGK WTVQQAAELS IAAPTIEASL DARFLSGLKE
301: ERVEAAKVFK SGGIGDIVTD QPVDKKKLVD DVRKALYAAK ICSYAQGMNL IRAKSIEKGW DLKLGELARI WKGGCIIRAI FLDRIKQAYD RNPNLANLLV
401: DPEFAKEIID RQSAWRRVVC LAINSGISTP GMSASLAYFD TYRRERLPAN LVQAQRDYFG AHTYERVDIE GSYHTEWFKL AKQSRI

Best Arabidopsis Sequence Match ( AT3G02360.2 )
(BLAST)

001: MAVQPTRIGL AGLAVMGQNL ALNIAEKGFP ISVYNRTTSK VDETVERAKK EGNLPLYGFH DPESFVKSIQ KPRVIIMLVK AGSPVDQTIK TLSAYLEKGD
101: CIVDGGNEWY ENTERREKAV AENGFLYLGM GVSGGEEGAR NGPSMMPGGS YEAYKNIEDI VLKVAAQVRD SGPCVTYIGK GGSGNFVKMV HNGIEYGDMQ
201: LIAEAYDVLK SVGKLSNEEL HSVFSDWNKG ELESFLVEIT ADIFGIKDDK GDGHLVDKVL DKTGMKGTGK WTVQQAAELS VPAPTIESSL DARFLSGLKD
301: ERVQAAKVFK AGGFGDILTD QKVDKKQLVD DVRKALYASK ICSYAQGMNL IRAKSIEKGW GLKLGELARI WKGGCIIRAI FLDRIKQAYD RNAELANLLV
401: DPEFAKEIIE RQSAWRRVVC LAINSGISTP GMSASLAYFD SYRRERLPAN LVQAQRDYFG AHTYERTDVE GSFHTEWFKI ARQSKI

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178VK18]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.