CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41670.1	KRG91803	AT1G35670.1	19130088
AT5G41670.1	KRH34983	AT1G35670.1	19130088
AT5G41670.1	KRH34984	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60004	Soybean	cytosol	94.75	97.91
VIT_02s0025g00900.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	87.68	87.85
Bra027685.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	86.06	87.47
CDY25568	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	85.86	87.27
CDY44457	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	85.66	87.06
AT5G41670.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	85.45	86.86
Bra025480.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	85.45	86.86
AT1G64190.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	85.45	86.86
CDY39725	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	85.25	86.65
CDY34406	Canola	extracellular	20.2	84.75
CDY34405	Canola	cytosol	23.84	83.1
GSMUA_Achr3P16150_001	Banana	mitochondrion	78.79	82.98
Solyc12g056120.1.1	Tomato	plastid	83.03	82.86
PGSC0003DMT400093802	Potato	cytosol	82.83	82.83
GSMUA_Achr2P06120_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.25	81.77
TraesCS1D01G361400.1	Wheat	cytosol, mitochondrion, plastid	73.33	75.94
KRH45161	Soybean	endoplasmic reticulum	73.13	74.49
KRH01445	Soybean	nucleus	72.93	74.28
Os11t0484500-01	Rice	plastid	75.96	74.02
TraesCS1B01G373600.1	Wheat	plastid	74.75	73.85
TraesCS1A01G357200.1	Wheat	unclear	74.55	73.65
EES08484	Sorghum	plastid	74.75	73.41
Zm00001d049187_P001	Maize	plastid	74.95	73.18
KRG93756	Soybean	plastid	74.34	68.53
HORVU1Hr1G080480.1	Barley	plastid	74.75	63.25

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	EntrezGene:100803740	Gene3D:3.40.50.720
MapMan:3.9.1.3	InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2
EMBL:ACUP02004759	EnsemblPlantsGene:GLYMA_08G020500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004616
GO:GO:0005488	GO:GO:0005975	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019521	GO:GO:0050661	GO:GO:0055114	UniProt:I1KPH6
InterPro:IPR013328	EnsemblPlants:KRH41276	ProteinID:KRH41276	ProteinID:KRH41276.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00393
PFAM:PF03446	PIRSF:PIRSF000109	PRINTS:PR00076	PANTHER:PTHR11811	PANTHER:PTHR11811:SF33	InterPro:Pgluconate_DH
SMART:SM01350	SUPFAM:SSF48179	SUPFAM:SSF51735	TIGRFAMs:TIGR00873	UniParc:UPI0001CAA7F7	:

Description

hypothetical protein

Coordinates

chr8:-:1666345..1668785

Molecular Weight (calculated)

53725.2 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.186

Length

495 amino acids

Sequence
(BLAST)

001: MESAALSRIG LAGLAVMGQN LALNIAEKGF PISVYNRTAS KVDETVDRAR NEGSLPLTGQ YTPRDFVLSL QRPRSVIILV KAGAPVDQTI AALSDHLDPG
101: DCIIDGGNEW YENTERRMSL VADKGLLYLG MGVSGGEDGA RHGPSLMPGG SHQAYSNVQD ILHKIAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK HVGGLSNSEL ADIFAEWNRG ELESFLIEIT ADIFKVKDED GEGFLVDKIL DKTGMKGTGK WTVQQAAELS IAAPTIAASL DCRYLSGLKE
301: ERESAAAVLK EAGLSDELGR VSVSGVDKKR LIDDVRQALY ASKICSYAQG MNLLRAKSNE KGWNLNLGEL ARIWKGGCII RAVFLDRIKK AYQRNPNLAS
401: LIVDPEFARE MVQRQAAWRR VVGLAVSAGI STPGMCASLA YFDTYRRARL PANLVQAQRD LFGAHTYERV DRPGAFHTEW TKLARKSGTG VGALN

Best Arabidopsis Sequence Match ( AT5G41670.2 )
(BLAST)

001: MESVALSRIG LAGLAVMGQN LALNIADKGF PISVYNRTTS KVDETLDRAS NEGKLPVAGQ YSPRDFVLSI QRPRSVIILV KAGAPVDQTI SALSEYMEPG
101: DCIIDGGNEW YQNTERRIVE AEKKGLLYLG MGVSGGEEGA RNGPSLMPGG SFTAYNNVKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNDEL AEIFTEWNRG ELESFLVEIT SDIFRVKDDY GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLE EAGLKEDIGS ASRGVDKKRL IDDVRQALYA SKICSYAQGM NLLRAKSLEK GWDLNLGEMA RIWKGGCIIR AVFLDRIKKA YQRNPNLASL
401: VVDPDFAKEM VQRQAAWRRV VGLAISAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKSQ

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178UQL8]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.