Factsheet for Bra025480.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

plastid 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid, secretory
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra034407.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41670.1	Bra034407.1-P	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39725	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	99.79	99.79
AT5G41670.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	97.33	97.33
Bra027685.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	94.05	94.05
VIT_02s0025g00900.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	88.5	87.25
KRH41276	Soybean	nucleus	86.86	85.45
KRH60004	Soybean	cytosol	82.75	84.13
PGSC0003DMT400093802	Potato	cytosol	85.01	83.64
Solyc12g056120.1.1	Tomato	plastid	85.01	83.47
GSMUA_Achr2P06120_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.5	80.76
GSMUA_Achr3P16150_001	Banana	mitochondrion	77.62	80.43
TraesCS1D01G361400.1	Wheat	cytosol, mitochondrion, plastid	73.1	74.48
Bra021465.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	73.31	73.46
Bra039172.1-P	Field mustard	mitochondrion	73.51	73.36
EES08484	Sorghum	plastid	75.56	73.02
TraesCS1B01G373600.1	Wheat	plastid	74.95	72.85
TraesCS1A01G357200.1	Wheat	unclear	74.74	72.65
Os11t0484500-01	Rice	plastid	75.36	72.24
Zm00001d049187_P001	Maize	plastid	74.74	71.79
Bra023725.1-P	Field mustard	cytosol	18.89	68.15
HORVU1Hr1G080480.1	Barley	plastid	74.74	62.22

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	Gene3D:3.40.50.720	MapMan:3.9.1.3
InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2	EnsemblPlantsGene:Bra025480
EnsemblPlants:Bra025480.1	EnsemblPlants:Bra025480.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004616	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005829	GO:GO:0005975	GO:GO:0006098	GO:GO:0006139	GO:GO:0008114
GO:GO:0008150	GO:GO:0008152	GO:GO:0009051	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009744	GO:GO:0009749	GO:GO:0009750	GO:GO:0009987	GO:GO:0016491
GO:GO:0019521	GO:GO:0046686	GO:GO:0050661	GO:GO:0055114	InterPro:IPR013328	UniProt:M4E9M4
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00393	PFAM:PF03446	PIRSF:PIRSF000109	PRINTS:PR00076	PANTHER:PTHR11811
PANTHER:PTHR11811:SF33	InterPro:Pgluconate_DH	SMART:SM01350	SUPFAM:SSF48179	SUPFAM:SSF51735	TIGRFAMs:TIGR00873
UniParc:UPI0002545471	:	:	:	:	:

Description

AT5G41670 (E=1e-275) | 6-phosphogluconate dehydrogenase family protein

Coordinates

chrA04:-:8478388..8479851

Molecular Weight (calculated)

53332.7 Da

IEP (calculated)

5.322

GRAVY (calculated)

-0.283

Length

487 amino acids

Sequence
(BLAST)

001: MESAALSRIG LAGLAVMGQN LALNIADKGF PISVYNRTTS KVDETLDRAS EEGKLPVSGQ YSPRDFVLSI QRPRSVIILV KAGAPVDQTI SALSEYMEPG
101: DCIIDGGNEW YQNTERRIVE AEKKGLLYLG MGVSGGEEGA RNGPSLMPGG SFQAYNNVKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNDEL AEIFTEWNRG ELESFLVEIT SDIFRVKDEF GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKE
301: ERENAAKVLE EAGLKEDIGS ASRGIDKKRL IDDVRQALYA SKICSYAQGM NLLRAKSVEK EWGLNLGEMA RIWKGGCIIR AVFLDRIKKA YQRNPNLASL
401: VVDPDFAKEM VQRQAAWRRV VGLAISAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKGN

Best Arabidopsis Sequence Match ( AT5G41670.2 )
(BLAST)

001: MESVALSRIG LAGLAVMGQN LALNIADKGF PISVYNRTTS KVDETLDRAS NEGKLPVAGQ YSPRDFVLSI QRPRSVIILV KAGAPVDQTI SALSEYMEPG
101: DCIIDGGNEW YQNTERRIVE AEKKGLLYLG MGVSGGEEGA RNGPSLMPGG SFTAYNNVKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNDEL AEIFTEWNRG ELESFLVEIT SDIFRVKDDY GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLE EAGLKEDIGS ASRGVDKKRL IDDVRQALYA SKICSYAQGM NLLRAKSLEK GWDLNLGEMA RIWKGGCIIR AVFLDRIKKA YQRNPNLASL
401: VVDPDFAKEM VQRQAAWRRV VGLAISAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKSQ

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178UQL8]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.