CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41670.1	KRG91803	AT1G35670.1	19130088
AT5G41670.1	KRH34983	AT1G35670.1	19130088
AT5G41670.1	KRH34984	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41276	Soybean	nucleus	97.91	94.75
VIT_02s0025g00900.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	86.85	84.21
AT5G41670.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	84.55	83.16
Bra027685.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	84.55	83.16
CDY34405	Canola	cytosol	24.63	83.1
CDY25568	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	84.34	82.96
CDY44457	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	84.34	82.96
Bra025480.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	84.13	82.75
AT1G64190.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	83.92	82.55
CDY39725	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	83.92	82.55
PGSC0003DMT400093802	Potato	cytosol	82.46	79.8
Solyc12g056120.1.1	Tomato	plastid	82.46	79.64
GSMUA_Achr3P16150_001	Banana	mitochondrion	77.87	79.36
GSMUA_Achr2P06120_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.88	77.47
TraesCS1D01G361400.1	Wheat	cytosol, mitochondrion, plastid	75.16	75.31
KRH45161	Soybean	endoplasmic reticulum	73.07	72.02
KRH01445	Soybean	nucleus	72.86	71.81
TraesCS1B01G373600.1	Wheat	plastid	74.95	71.66
TraesCS1A01G357200.1	Wheat	unclear	74.74	71.46
Os11t0484500-01	Rice	plastid	75.78	71.46
EES08484	Sorghum	plastid	74.95	71.23
Zm00001d049187_P001	Maize	plastid	75.37	71.2
CDY34406	Canola	extracellular	16.91	68.64
KRG93756	Soybean	plastid	73.7	65.74
HORVU1Hr1G080480.1	Barley	plastid	74.95	61.37

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	Gene3D:3.40.50.720	MapMan:3.9.1.3
InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2	UniProt:A0A0R0K737
EMBL:ACUP02003347	EnsemblPlantsGene:GLYMA_05G214000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004616
GO:GO:0005488	GO:GO:0005975	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019521	GO:GO:0050661	GO:GO:0055114	InterPro:IPR013328
EnsemblPlants:KRH60004	ProteinID:KRH60004	ProteinID:KRH60004.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00393	PFAM:PF03446
PIRSF:PIRSF000109	PRINTS:PR00076	PANTHER:PTHR11811	PANTHER:PTHR11811:SF33	InterPro:Pgluconate_DH	SMART:SM01350
SUPFAM:SSF48179	SUPFAM:SSF51735	TIGRFAMs:TIGR00873	UniParc:UPI0006EDF9C6	:	:

Description

hypothetical protein

Coordinates

chr5:-:39521123..39523548

Molecular Weight (calculated)

52269.4 Da

IEP (calculated)

6.680

GRAVY (calculated)

-0.236

Length

479 amino acids

Sequence
(BLAST)

001: MGQNLALNIA EKGFPISVYN RTASKVDQTV DRARNEGSLP LTGQYTPRDF VLSLQRPRSV IILVKAGSPV DHTIAALSDH LDPGDCIIDG GNEWYENTER
101: RMNLVADKGL LYLGMGVSGG EDGARHGPSL MPGGSHHAYS NVQDILHKIA AQVEDGPCVT YIGEGGSGNF VKMVHNGIEY GDMQLISEAY DVLKHVGGLS
201: NSELAEIFVE WNRGELESFL IEITADIFKV KDEDGEGFLV DKILDKTGMK GTGKWTVQQA AELSIAAPTI AASLDCRYLS GLKEERESAA AVLKEAGLSD
301: ELGRVNVSGV DKKRLIDDVR QALYASKICS YAQGMNLLRA KSNEKGWNLN LGELARIWKG GCIIRAVFLD RIKKAYQRNP NLASLIVDPE FAREMVQRQA
401: AWRRVVGLAV SAGISTPGMC ASLAYFDTYR RARLPANLVQ AQRDLFGAHT YERVDRPGAF HTEWTKLARN SGAGVGALN

Best Arabidopsis Sequence Match ( AT5G41670.2 )
(BLAST)

001: MESVALSRIG LAGLAVMGQN LALNIADKGF PISVYNRTTS KVDETLDRAS NEGKLPVAGQ YSPRDFVLSI QRPRSVIILV KAGAPVDQTI SALSEYMEPG
101: DCIIDGGNEW YQNTERRIVE AEKKGLLYLG MGVSGGEEGA RNGPSLMPGG SFTAYNNVKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNDEL AEIFTEWNRG ELESFLVEIT SDIFRVKDDY GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLE EAGLKEDIGS ASRGVDKKRL IDDVRQALYA SKICSYAQGM NLLRAKSLEK GWDLNLGEMA RIWKGGCIIR AVFLDRIKKA YQRNPNLASL
401: VVDPDFAKEM VQRQAAWRRV VGLAISAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKSQ

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178UQL8]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.