Factsheet for Zm00001d049187_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41670.1	Zm00001d004812_P002	AT1G35670.1	19130088
AT5G41670.1	Zm00001d023560_P002	AT1G35670.1	19130088
AT5G41670.1	Zm00001d053016_P002	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08484	Sorghum	plastid	93.69	94.25
Os11t0484500-01	Rice	plastid	92.31	92.13
TraesCS1D01G361400.1	Wheat	cytosol, mitochondrion, plastid	85.01	90.17
TraesCS1B01G373600.1	Wheat	plastid	87.97	89.02
TraesCS1A01G357200.1	Wheat	unclear	87.97	89.02
HORVU1Hr1G080480.1	Barley	plastid	88.36	76.58
GSMUA_Achr3P16150_001	Banana	mitochondrion	70.61	76.17
GSMUA_Achr2P06120_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	58.97	75.7
Bra027685.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.58	75.56
KRH60004	Soybean	cytosol	71.2	75.37
CDY25568	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.39	75.36
AT5G41670.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.19	75.15
VIT_02s0025g00900.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	73.18	75.1
KRH41276	Soybean	nucleus	73.18	74.95
CDY44457	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	71.99	74.95
CDY39725	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	71.99	74.95
AT1G64190.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	71.99	74.95
Bra025480.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	71.79	74.74
Solyc12g056120.1.1	Tomato	plastid	72.39	73.99
PGSC0003DMT400093802	Potato	cytosol	72.19	73.94
CDY34405	Canola	cytosol	20.51	73.24
Zm00001d042184_P001	Maize	plastid	66.27	70.0
Zm00001d035925_P001	Maize	cytosol, mitochondrion	65.48	66.14
CDY34406	Canola	extracellular	15.38	66.1

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	EntrezGene:100856973	Gene3D:3.40.50.720
MapMan:3.9.1.3	InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2
ProteinID:AQK49785.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004616	GO:GO:0005488
GO:GO:0005975	GO:GO:0006098	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009409	GO:GO:0009414	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	GO:GO:0016491	GO:GO:0019521	GO:GO:0050661	GO:GO:0055114	InterPro:IPR013328
UniProt:K7TVZ1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00393	PFAM:PF03446	PIRSF:PIRSF000109	PRINTS:PR00076
PANTHER:PTHR11811	PANTHER:PTHR11811:SF33	InterPro:Pgluconate_DH	SMART:SM01350	SUPFAM:SSF48179	SUPFAM:SSF51735
TIGRFAMs:TIGR00873	UniParc:UPI0001CAB304	EnsemblPlantsGene:Zm00001d049187	EnsemblPlants:Zm00001d049187_P001	EnsemblPlants:Zm00001d049187_T001	SEG:seg

Description

phosphogluconate dehydrogenase3 phosphogluconate dehydrogenase3

Coordinates

chr4:-:19755800..19757563

Molecular Weight (calculated)

54170.7 Da

IEP (calculated)

6.686

GRAVY (calculated)

-0.108

Length

507 amino acids

Sequence
(BLAST)

001: MASPAPASPA AAAAHCPPPR IGLAGLATMG QNLALNIAEK GFPISVYNRT AAKVDSTLSR ARDEGSLPVL GHRDPRGFVL SLARPRAVVL LVQAGPAVDA
101: TIQALSPYLE PGDAIVDGGN EWYQNTERRI QEAAARGVLY LGMGVSGGEE GARNGPSLMP GGSADAYANI RDILQKAAAQ TEDGACVTFV GPGGAGNFVK
201: MVHNGIEYGD MQLIAEAYDV LRRLGGLSNS EIADVFAEWN RGELESFLVQ ITADIFTVAD PLDGSGSGGG ALVDRILDKT GMKGTGKWTV QQAAELAVAA
301: PTIAASLDGR YLSGLKDERV AAAGVLEEEG MPAGLLETVN VDKKVLVDRV RQALYASKIC SYAQGMNLLR AKSVEKGWNL NLAELARIWK GGCIIRARFL
401: DRIKSAYDRN PELANLIVDR EFAREMVQRQ NAWRWVVARA VEAGISTPGM TASLSYFDTY RSSRLPANLI QAQRDLFGAH TYERIDCPGS FHTEWTKLAR
501: RSNGAAI

Best Arabidopsis Sequence Match ( AT1G64190.1 )
(BLAST)

001: MESAALSRIG LAGLAVMGQN LALNIAEKGF PISVYNRTTS KVDETLDRAA VEGNLPVSGQ YSPRDFVLSI QRPRSLIILV KAGAPVDQTI DAFSEYMEPG
101: DCIIDGGNEW YQNTERRISE AEQKGLLYLG MGVSGGEEGA RNGPSLMPGG SFQAYDNIKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNEEL AEIFTEWNSG ELESFLVEIT SDIFRVKDEF GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLR EAGLKEEIGS ASSGIDKKRL VDDVRQALYA SKICSYAQGM NLLRAKSLEK SWNLNFGELA RIWKGGCIIR AVFLDRIKKA YQRNPDLASL
401: VVDPEFAKEM VQRQAAWRRV VGLAVSAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKNH

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SH69]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.