Factsheet for GSMUA_Achr2P06120_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi

Predictor Summary:

plastid 2
cytosol 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	secretory
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41670.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT5G41670.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT5G41670.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT5G41670.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34405	Canola	cytosol	28.35	78.87
GSMUA_Achr3P16150_001	Banana	mitochondrion	90.38	75.96
Bra027685.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.27	65.91
CDY25568	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.27	65.91
VIT_02s0025g00900.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	82.28	65.79
CDY39725	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	81.01	65.71
CDY44457	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	81.01	65.71
Bra025480.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	80.76	65.5
AT1G64190.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.76	65.5
AT5G41670.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.51	65.3
KRH41276	Soybean	nucleus	81.77	65.25
CDY34406	Canola	extracellular	19.24	64.41
KRH60004	Soybean	cytosol	77.47	63.88
PGSC0003DMT400093802	Potato	cytosol	78.48	62.63
Solyc12g056120.1.1	Tomato	plastid	78.48	62.5
TraesCS1D01G361400.1	Wheat	cytosol, mitochondrion, plastid	73.42	60.67
Os11t0484500-01	Rice	plastid	77.47	60.24
EES08484	Sorghum	plastid	76.2	59.72
TraesCS1A01G357200.1	Wheat	unclear	75.7	59.68
TraesCS1B01G373600.1	Wheat	plastid	75.7	59.68
Zm00001d049187_P001	Maize	plastid	75.7	58.97
GSMUA_Achr2P18030_001	Banana	cytosol	41.27	54.7
HORVU1Hr1G080480.1	Barley	plastid	75.7	51.11
GSMUA_Achr5P03620_001	Banana	mitochondrion, peroxisome, plastid	52.91	45.04

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:3.40.50.720	MapMan:3.9.1.3	InterPro:6-PGluconate_DH-like_C_sf
InterPro:6PGDH_C	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004616	GO:GO:0005488	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0050661	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr2G06120_001	EnsemblPlants:GSMUA_Achr2P06120_001
EnsemblPlants:GSMUA_Achr2T06120_001	InterPro:IPR013328	UniProt:M0S5K3	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00393	PFAM:PF03446
PRINTS:PR00076	PANTHER:PTHR11811	PANTHER:PTHR11811:SF33	InterPro:Pgluconate_DH	SMART:SM01350	SUPFAM:SSF48179
SUPFAM:SSF51735	UniParc:UPI00029544BC	SEG:seg	:	:	:

Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:GMGC_GENE;Acc:GSMUA_Achr2G06120_001]

Coordinates

chr2:-:11015293..11017041

Molecular Weight (calculated)

42780.2 Da

IEP (calculated)

6.538

GRAVY (calculated)

-0.176

Length

395 amino acids

Sequence
(BLAST)

001: MAVESAVLSR IGLAGLAVMG QNLALNIAEK GFPISVYNRT ASKVDETVSR AAAEGGLPMS GHRSAQDFVL SLRRPRSVII LVKAGAPWYE NTERRIREAA
101: ARGILYLGMG VSGGEDGARN GPSLMPGGSL QAYQNVEDIL TRVAAQVDDG PCVTFVGEGG SGNFVKMVHN GIEYGDMQLI SEAYDVLRIV GGLSNPELAE
201: TFAEWNRGEL ESFLIEITAD IFGVRDEHGD GELVDKILDK TGMKGTGKWT VQQAAELSVA APTIAASLDC RYLSGLKDER EAAAKALDQA GIGSGDFISG
301: RSVDKKRLID DVRQALYASK ICSYAQGMNL LRAKSAEKGW NLNLGELARI WKGGCIIRAR FLDRIKKAYE RNRGLANLIV DPEFAREMQN WCRHP

Best Arabidopsis Sequence Match ( AT5G41670.2 )
(BLAST)

001: MESVALSRIG LAGLAVMGQN LALNIADKGF PISVYNRTTS KVDETLDRAS NEGKLPVAGQ YSPRDFVLSI QRPRSVIILV KAGAPVDQTI SALSEYMEPG
101: DCIIDGGNEW YQNTERRIVE AEKKGLLYLG MGVSGGEEGA RNGPSLMPGG SFTAYNNVKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNDEL AEIFTEWNRG ELESFLVEIT SDIFRVKDDY GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLE EAGLKEDIGS ASRGVDKKRL IDDVRQALYA SKICSYAQGM NLLRAKSLEK GWDLNLGEMA RIWKGGCIIR AVFLDRIKKA YQRNPNLASL
401: VVDPDFAKEM VQRQAAWRRV VGLAISAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKSQ

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178UQL8]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.