Factsheet for VIT_02s0025g00900.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, plasma membrane, golgi

Predictor Summary:

mitochondrion 3
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, peroxisome, plastid, secretory
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	mitochondrion
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41670.1	VIT_18s0072g01030.t01	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027685.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	87.45	88.71
Bra025480.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	87.25	88.5
CDY25568	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	87.25	88.5
CDY44457	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	87.25	88.5
AT1G64190.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	87.25	88.5
CDY39725	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	87.04	88.3
AT5G41670.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	86.84	88.09
KRH41276	Soybean	nucleus	87.85	87.68
KRH60004	Soybean	cytosol	84.21	86.85
CDY34405	Canola	cytosol	24.7	85.92
CDY34406	Canola	extracellular	20.24	84.75
GSMUA_Achr3P16150_001	Banana	mitochondrion	79.76	83.83
Solyc12g056120.1.1	Tomato	plastid	83.6	83.27
PGSC0003DMT400093802	Potato	cytosol	83.4	83.23
GSMUA_Achr2P06120_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.79	82.28
TraesCS1D01G361400.1	Wheat	cytosol, mitochondrion, plastid	73.48	75.94
VIT_02s0012g03060.t01	Wine grape	cytosol	10.73	75.71
TraesCS1B01G373600.1	Wheat	plastid	75.1	74.05
TraesCS1A01G357200.1	Wheat	unclear	74.9	73.85
EES08484	Sorghum	plastid	75.1	73.61
VIT_01s0010g01130.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.49	73.6
Os11t0484500-01	Rice	plastid	75.51	73.43
Zm00001d049187_P001	Maize	plastid	75.1	73.18
HORVU1Hr1G080480.1	Barley	plastid	74.7	63.08
VIT_16s0013g01670.t01	Wine grape	extracellular	13.36	49.25

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	EntrezGene:100241717	wikigene:100241717
Gene3D:3.40.50.720	MapMan:3.9.1.3	InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd
InterPro:6PGD_dom2	EMBL:AM458581	ProteinID:CAN63456	ProteinID:CAN63456.1	ProteinID:CCB58224	ProteinID:CCB58224.1
UniProt:F6HUQ8	EMBL:FN596251	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004616
GO:GO:0005488	GO:GO:0005975	GO:GO:0006098	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009409	GO:GO:0009414	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719
GO:GO:0009737	GO:GO:0009987	GO:GO:0016491	GO:GO:0019521	GO:GO:0050661	GO:GO:0055114
InterPro:IPR013328	EntrezGene:LOC100241717	wikigene:LOC100241717	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00393	PFAM:PF03446
PIRSF:PIRSF000109	PRINTS:PR00076	PANTHER:PTHR11811	PANTHER:PTHR11811:SF33	InterPro:Pgluconate_DH	SMART:SM01350
SUPFAM:SSF48179	SUPFAM:SSF51735	TIGR:TC64094	TIGRFAMs:TIGR00873	UniParc:UPI0001982B20	ArrayExpress:VIT_02s0025g00900
EnsemblPlantsGene:VIT_02s0025g00900	EnsemblPlants:VIT_02s0025g00900.t01	unigene:Vvi.6832	RefSeq:XP_002275970	RefSeq:XP_002275970.1	:

Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:F6HUQ8]

Coordinates

chr2:-:871157..872977

Molecular Weight (calculated)

53899.4 Da

IEP (calculated)

6.611

GRAVY (calculated)

-0.224

Length

494 amino acids

Sequence
(BLAST)

001: MEASTLSRIG LAGLAVMGQN LALNIAEKGF PISVYNRTTS KVDETLDRAH REGHLPLSGH YSPRDFVLSI QRPRSIVILV KAGAPVDQTI AALSEHMEAG
101: DCIIDGGNEW YENTERRIVE ASGKGILYLG MGVSGGEEGA RHGPSLMPGG SYQAYQNIED IVKKVAAQVD DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNSEL SDIFGEWNRG ELESFLIEIT ADIFKVKDEH GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKE
301: EREAAAGVLS EAGLKDEVGF ARSGVDKKRL IDDVRQALYA SKICSYAQGM NLLRAKSVEK GWNLNFGELA RIWKGGCIIR AVFLDRIKKA YQRNPNLASL
401: IVDPEFAREM VQRQAAWRRV VGLAISAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERID RPGSFHTEWT KLARKSDAGF ATLK

Best Arabidopsis Sequence Match ( AT5G41670.2 )
(BLAST)

001: MESVALSRIG LAGLAVMGQN LALNIADKGF PISVYNRTTS KVDETLDRAS NEGKLPVAGQ YSPRDFVLSI QRPRSVIILV KAGAPVDQTI SALSEYMEPG
101: DCIIDGGNEW YQNTERRIVE AEKKGLLYLG MGVSGGEEGA RNGPSLMPGG SFTAYNNVKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNDEL AEIFTEWNRG ELESFLVEIT SDIFRVKDDY GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLE EAGLKEDIGS ASRGVDKKRL IDDVRQALYA SKICSYAQGM NLLRAKSLEK GWDLNLGEMA RIWKGGCIIR AVFLDRIKKA YQRNPNLASL
401: VVDPDFAKEM VQRQAAWRRV VGLAISAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKSQ

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178UQL8]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.