Factsheet for GSMUA_Achr3P16150_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41670.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT5G41670.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT5G41670.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT5G41670.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P06120_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	75.96	90.38
VIT_02s0025g00900.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	83.83	79.76
KRH41276	Soybean	nucleus	82.98	78.79
KRH60004	Soybean	cytosol	79.36	77.87
Bra025480.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	80.43	77.62
CDY34405	Canola	cytosol	23.4	77.46
CDY39725	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	80.21	77.41
Bra027685.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.0	77.21
CDY44457	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	80.0	77.21
CDY25568	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	79.79	77.0
GSMUA_Achr2P18030_001	Banana	cytosol	48.72	76.85
AT5G41670.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	79.57	76.8
AT1G64190.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	79.57	76.8
PGSC0003DMT400093802	Potato	cytosol	77.45	73.54
Solyc12g056120.1.1	Tomato	plastid	77.45	73.39
TraesCS1D01G361400.1	Wheat	cytosol, mitochondrion, plastid	73.83	72.59
Os11t0484500-01	Rice	plastid	77.02	71.26
TraesCS1A01G357200.1	Wheat	unclear	75.96	71.26
EES08484	Sorghum	plastid	76.38	71.23
TraesCS1B01G373600.1	Wheat	plastid	75.53	70.86
Zm00001d049187_P001	Maize	plastid	76.17	70.61
CDY34406	Canola	extracellular	15.74	62.71
HORVU1Hr1G080480.1	Barley	plastid	75.96	61.03
GSMUA_Achr5P03620_001	Banana	mitochondrion, peroxisome, plastid	57.66	58.41

Protein Annotations

KEGG:00030+1.1.1.44	KEGG:00480+1.1.1.44	Gene3D:1.10.1040.10	Gene3D:1.20.5.320	Gene3D:3.40.50.720	MapMan:3.9.1.3
InterPro:6-PGluconate_DH-like_C_sf	InterPro:6PGDH_C	InterPro:6PGDH_Gnd/GntZ	InterPro:6PGDH_NADP-bd	InterPro:6PGD_dom2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004616	GO:GO:0005488	GO:GO:0005975	GO:GO:0006098
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019521
GO:GO:0050661	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr3G16150_001	EnsemblPlants:GSMUA_Achr3P16150_001	EnsemblPlants:GSMUA_Achr3T16150_001	InterPro:IPR013328
UniProt:M0SF31	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00393	PFAM:PF03446	PIRSF:PIRSF000109	PRINTS:PR00076
PANTHER:PTHR11811	PANTHER:PTHR11811:SF33	InterPro:Pgluconate_DH	SMART:SM01350	SUPFAM:SSF48179	SUPFAM:SSF51735
TIGRFAMs:TIGR00873	UniParc:UPI000295A829	SEG:seg	:	:	:

Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:GMGC_GENE;Acc:GSMUA_Achr3G16150_001]

Coordinates

chr3:+:17258344..17260105

Molecular Weight (calculated)

50962.1 Da

IEP (calculated)

8.645

GRAVY (calculated)

-0.174

Length

470 amino acids

Sequence
(BLAST)

001: MDTAALSRIG LAGLAVMGQN LALNVAEKGF PISVYNRTAS KVDETVSRAA TEGGLPLSGH RSPQDFVLSL RRPRAVVILV KAGAPWYENT ERRIREAAAR
101: GILYLGMGVS GGEDGARHGP SLMPGGSLQA YRNVEDILTR VAAQVDDGPC VTFVGEGGAG NFVKMVHNGI EYGDMQLIAE AYDVLRVVGG LSNSELAQTF
201: GEWNRGELES FLIEITADIF GVHDEHGGGE LVDKILDKTG MKGTGKWTVQ QAAELSVAAP TIAASLDCRY LSGLKEEREA ASKALEQAGI GRGDFSVGRS
301: IDKRRLIDDV RQALYASKIC SYAQGMNLLG AKSAEKGWNL NLGELARIWK GGCIIRARFL DRIKKAYERN LGLANLIVDP EFAREMVQRQ AAWRRVVGLA
401: IEAGISTPGM CASLAYFDTY RRARLPANLV QAQRDYFGAH TYERVDRPGS FHTEWSKIAR QSKIGAGILN

Best Arabidopsis Sequence Match ( AT5G41670.2 )
(BLAST)

001: MESVALSRIG LAGLAVMGQN LALNIADKGF PISVYNRTTS KVDETLDRAS NEGKLPVAGQ YSPRDFVLSI QRPRSVIILV KAGAPVDQTI SALSEYMEPG
101: DCIIDGGNEW YQNTERRIVE AEKKGLLYLG MGVSGGEEGA RNGPSLMPGG SFTAYNNVKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNDEL AEIFTEWNRG ELESFLVEIT SDIFRVKDDY GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLE EAGLKEDIGS ASRGVDKKRL IDDVRQALYA SKICSYAQGM NLLRAKSLEK GWDLNLGEMA RIWKGGCIIR AVFLDRIKKA YQRNPNLASL
401: VVDPDFAKEM VQRQAAWRRV VGLAISAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKSQ

Arabidopsis Description

6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178UQL8]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.